Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30147
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   1.0  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)               27   4.1  
SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)                      27   4.1  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      27   7.2  
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 26   9.5  

>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -3

Query: 276 CYHGGGSHFDIMLPAIKFP*YDWAEAAMLPAI-IPDA--LKPSRGATIGIKN-PPMQRDA 109
           C  G   H  ++     F   D    A+L  + +PD   +KP + +  G+K+ PP+++  
Sbjct: 150 CIKGIHHHVPVLFDYFHFAVVDTTIHAVLTGLSLPDPSIIKPVKTSWFGVKSGPPLRQST 209

Query: 108 PPTMLTIRAVKNP 70
           PP    +   K P
Sbjct: 210 PPFYTKLFGTKPP 222


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 184  HYSRCAEAEQRCHDWDQKPSHAKRR 110
            + S C E EQ C D   K +H K+R
Sbjct: 2222 YISSCVETEQSCDDLGPKKTHVKKR 2246


>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
          Length = 905

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 184 HYSRCAEAEQRCHDWDQKPSHA-KRRSAYDVDY*GSEKSHDP*VTVTS 44
           H S+ AEAE+ C D   KP+ A K R++       SE++ D  V + S
Sbjct: 587 HVSKPAEAEKSCADHLSKPAEAEKSRASQAKTPPKSERTGDDYVNIRS 634


>SB_44410| Best HMM Match : RCSD (HMM E-Value=7.2)
          Length = 117

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 189 PAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNPMILK 58
           P++  D+ +PS  AT  + +PP   D PPT + +    +P +++
Sbjct: 32  PSLSSDS-EPSTPATNAL-SPPQSIDHPPTPMEVETTPSPTVIE 73


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -3

Query: 216  YDWAE-AAMLPAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKN 73
            Y WA   A  P ++  A KP+  AT  +  PP     P   +   +V++
Sbjct: 911  YSWANPTATKPKVLTSASKPTSYATKTVPPPPKPTQHPTKSVPASSVRS 959


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 233 PLNSRNTTGLKLQCFPPLFPMR*SRAEVPRLGSKTLPCK 117
           P+ ++++        PP F +     EVP+ GS TL CK
Sbjct: 621 PVGTKSSEAFLKIFVPPSFDVLPKDLEVPQGGSPTLQCK 659


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,648
Number of Sequences: 59808
Number of extensions: 255623
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)