Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30147
         (392 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    25   0.75 
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   2.3  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   4.0  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   5.3  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   5.3  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -3

Query: 162 PSRGATI-GIKNPPMQRDAPPTMLTIRAVKNPMILK 58
           PSR A   GI +PP     PP+ L+   V  P +L+
Sbjct: 771 PSRSAFADGIGSPPPPPPPPPSSLSPGGVPRPTVLQ 806


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +1

Query: 64   DHGIFHCPNSQHRRRSVS--LHGRV 132
            +H +FHCP S   R  +    H RV
Sbjct: 949  EHVLFHCPRSDRIRNEMQQRCHSRV 973


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
            protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +1

Query: 64   DHGIFHCPNSQHRRRSVSLH-GRVFDPNRGTSARLQRIG 177
            +H +FHCP     R  +++  G   +    T   L+  G
Sbjct: 919  EHVLFHCPRFAEERHEITVKCGTTINGTNLTELMLKNAG 957


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -3

Query: 237 PAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRDAPP 103
           P +  P         +P + P  ++P   +  G++ PPM    PP
Sbjct: 222 PGVPMPMRPQMPPGAVPGMQP-GMQPRPPSAQGMQRPPMMGQPPP 265


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 64   DHGIFHCPNSQHRRRSVSLHGRV 132
            DH +FHCP     R  ++   RV
Sbjct: 982  DHVMFHCPRFAEERLQLNESCRV 1004


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,218
Number of Sequences: 2352
Number of extensions: 9550
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30784536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)