Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30147
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical pr... 29 1.2
AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity... 29 1.2
U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1 (de... 27 4.8
U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1 (de... 27 4.8
U40801-1|AAA81501.1| 279|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 26 8.4
U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical p... 26 8.4
AL023845-4|CAA19541.1| 516|Caenorhabditis elegans Hypothetical ... 26 8.4
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 26 8.4
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 26 8.4
>Z81049-2|CAB02847.2| 576|Caenorhabditis elegans Hypothetical
protein C48D1.3 protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 20 LICIVYLVRSYCDLRIMGFFTALIVNIVGGASL 118
L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>AB030946-1|BAA90483.1| 576|Caenorhabditis elegans high-affinity
choline transporterCHO-1 protein.
Length = 576
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 20 LICIVYLVRSYCDLRIMGFFTALIVNIVGGASL 118
L+C+VY+ RS + G+ L++ ++GG L
Sbjct: 423 LLCVVYMPRSNTYGSLAGYAVGLVLRLIGGEPL 455
>U52002-9|AAB37727.2| 839|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform a protein.
Length = 839
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 130 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 252
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 578 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 622
>U52002-8|AAU05577.1| 842|Caenorhabditis elegans Human dice1
(deleted in cancer)homolog protein 1, isoform b protein.
Length = 842
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +1
Query: 130 VFDPNRGTSARLQRIGNNGGKH----CSFSPVVLREFNGRKHYIK 252
+FDPN+ T + ++G + C F P+ L RK YI+
Sbjct: 581 MFDPNKITLLDMAKLGTKARFNTLGLCFFHPIFLANSTSRKFYIQ 625
>U40801-1|AAA81501.1| 279|Caenorhabditis elegans Hypothetical
protein F28E10.2 protein.
Length = 279
Score = 27.1 bits (57), Expect = 4.8
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 DKDYQVLICIVYLVRSYCDLRIMGFFTALIVNIVGG--ASLCMGGFLIPIVAPLLGF 166
D Q+ C + + CD +MG + ++ +VGG SL + +I I+ LL F
Sbjct: 154 DGSRQICHCDIGYMGETCDKVLMGAYDVKLLKVVGGTTTSLNLVCIIIAILFALLYF 210
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 106 RSVSLHGRVFDPNRGTSARLQRIGNNGGK 192
RSV +H + D RGTS + + GN G +
Sbjct: 139 RSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
>U23515-13|AAK21453.1| 823|Caenorhabditis elegans Hypothetical
protein R144.2a protein.
Length = 823
Score = 26.2 bits (55), Expect = 8.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 148 GTSARLQRIGNNGGKHCSFSPVVLREFNGRKHYIKVTAAA 267
G +R IG + K P ++ NGR+H I++T +A
Sbjct: 479 GAPSRELYIGGHPFKGQFGGPPIIATINGRRHEIRLTGSA 518
>AL023845-4|CAA19541.1| 516|Caenorhabditis elegans Hypothetical
protein Y51B9A.6 protein.
Length = 516
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 77 FTALIVNIVGGASLCMGGFLIPIVAP 154
F IV I+ +SL G FL+P + P
Sbjct: 419 FVMSIVQIIACSSLMAGSFLVPALTP 444
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 106 RSVSLHGRVFDPNRGTSARLQRIGNNGGK 192
RSV +H + D RGTS + + GN G +
Sbjct: 139 RSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 26.2 bits (55), Expect = 8.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 106 RSVSLHGRVFDPNRGTSARLQRIGNNGGK 192
RSV +H + D RGTS + + GN G +
Sbjct: 139 RSVVIHEKTDDLGRGTSDQSKTTGNAGSR 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,344,360
Number of Sequences: 27780
Number of extensions: 190015
Number of successful extensions: 420
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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