BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= heS30147 (392 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g25670.1 68416.m03195 leucine-rich repeat family protein cont... 28 2.0 At1g76360.1 68414.m08872 protein kinase, putative similar to pro... 28 2.6 At3g16730.1 68416.m02136 expressed protein ; expression supporte... 27 3.4 At3g43583.1 68416.m04636 hypothetical protein 27 6.0 At3g01370.1 68416.m00059 expressed protein contains Pfam domain,... 27 6.0 At1g03170.1 68414.m00294 expressed protein 26 7.9 >At3g25670.1 68416.m03195 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; + Length = 475 Score = 28.3 bits (60), Expect = 2.0 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +1 Query: 235 RKHYIKVTAAAMIAPTP*VCQKQITAARQYILDLK 339 RK Y K+ + P +CQ ++ +RQY++ LK Sbjct: 378 RKFYEKMGTRFKASKNPNLCQDVVSESRQYVVGLK 412 >At1g76360.1 68414.m08872 protein kinase, putative similar to protein kinase APK1B, SWISS-PROT:P46573; contains protein kinase domain, Pfam:PF00069 Length = 484 Score = 27.9 bits (59), Expect = 2.6 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 189 PAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNPMILKSQ 52 PA P KP T ++NPP ++ T R+V+NP K Q Sbjct: 61 PAATPPREKPQHRTTRSVENPPREKPQEKT----RSVENPPREKPQ 102 >At3g16730.1 68416.m02136 expressed protein ; expression supported by MPSS Length = 695 Score = 27.5 bits (58), Expect = 3.4 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = +1 Query: 88 NSQHRRRSV--SLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPV 213 NS HR SV S H V G SAR +G N G + SP+ Sbjct: 226 NSAHRGSSVRKSFHSSV--GRSGGSARKSSVGKNQGTNVHLSPI 267 >At3g43583.1 68416.m04636 hypothetical protein Length = 100 Score = 26.6 bits (56), Expect = 6.0 Identities = 10/15 (66%), Positives = 10/15 (66%) Frame = +1 Query: 67 HGIFHCPNSQHRRRS 111 H FHC S HRRRS Sbjct: 65 HRSFHCHRSNHRRRS 79 >At3g01370.1 68416.m00059 expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578) Length = 1011 Score = 26.6 bits (56), Expect = 6.0 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -3 Query: 195 MLPAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNPM 67 +LPA++PD +P R G+ +P + D M TIR + P+ Sbjct: 355 LLPAVVPDYRRPFRLLPYGV-SPKLTDD---EMTTIRRLGRPL 393 >At1g03170.1 68414.m00294 expressed protein Length = 240 Score = 26.2 bits (55), Expect = 7.9 Identities = 12/31 (38%), Positives = 14/31 (45%) Frame = -3 Query: 204 EAAMLPAIIPDALKPSRGATIGIKNPPMQRD 112 EA P P LKP + K PPM R+ Sbjct: 86 EATTTPRAPPRQLKPQEDTNLPDKTPPMSRN 116 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,925,202 Number of Sequences: 28952 Number of extensions: 184660 Number of successful extensions: 409 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 403 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 409 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 567552648 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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