Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30147
         (392 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25670.1 68416.m03195 leucine-rich repeat family protein cont...    28   2.0  
At1g76360.1 68414.m08872 protein kinase, putative similar to pro...    28   2.6  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    27   3.4  
At3g43583.1 68416.m04636 hypothetical protein                          27   6.0  
At3g01370.1 68416.m00059 expressed protein contains Pfam domain,...    27   6.0  
At1g03170.1 68414.m00294 expressed protein                             26   7.9  

>At3g25670.1 68416.m03195 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; +
          Length = 475

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 235 RKHYIKVTAAAMIAPTP*VCQKQITAARQYILDLK 339
           RK Y K+      +  P +CQ  ++ +RQY++ LK
Sbjct: 378 RKFYEKMGTRFKASKNPNLCQDVVSESRQYVVGLK 412


>At1g76360.1 68414.m08872 protein kinase, putative similar to
           protein kinase APK1B, SWISS-PROT:P46573; contains
           protein kinase domain, Pfam:PF00069
          Length = 484

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 189 PAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNPMILKSQ 52
           PA  P   KP    T  ++NPP ++    T    R+V+NP   K Q
Sbjct: 61  PAATPPREKPQHRTTRSVENPPREKPQEKT----RSVENPPREKPQ 102


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 88  NSQHRRRSV--SLHGRVFDPNRGTSARLQRIGNNGGKHCSFSPV 213
           NS HR  SV  S H  V     G SAR   +G N G +   SP+
Sbjct: 226 NSAHRGSSVRKSFHSSV--GRSGGSARKSSVGKNQGTNVHLSPI 267


>At3g43583.1 68416.m04636 hypothetical protein
          Length = 100

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +1

Query: 67  HGIFHCPNSQHRRRS 111
           H  FHC  S HRRRS
Sbjct: 65  HRSFHCHRSNHRRRS 79


>At3g01370.1 68416.m00059 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 1011

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 195 MLPAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNPM 67
           +LPA++PD  +P R    G+ +P +  D    M TIR +  P+
Sbjct: 355 LLPAVVPDYRRPFRLLPYGV-SPKLTDD---EMTTIRRLGRPL 393


>At1g03170.1 68414.m00294 expressed protein
          Length = 240

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 204 EAAMLPAIIPDALKPSRGATIGIKNPPMQRD 112
           EA   P   P  LKP     +  K PPM R+
Sbjct: 86  EATTTPRAPPRQLKPQEDTNLPDKTPPMSRN 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,202
Number of Sequences: 28952
Number of extensions: 184660
Number of successful extensions: 409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)