Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30146
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1; Planta...    34   3.2  
UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma j...    34   3.2  
UniRef50_Q589S4 Cluster: HMG protein TCF/LEF; n=1; Dugesia japon...    34   3.2  

>UniRef50_Q0P6N7 Cluster: Plasma memebrane H+-ATPase; n=1;
          Plantago major|Rep: Plasma memebrane H+-ATPase -
          Plantago major (Common plantain)
          Length = 106

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 24 LELVXPPGCRNSARG 68
          LELV PPGCRNSARG
Sbjct: 11 LELVDPPGCRNSARG 25


>UniRef50_Q5C0A4 Cluster: SJCHGC09205 protein; n=1; Schistosoma
          japonicum|Rep: SJCHGC09205 protein - Schistosoma
          japonicum (Blood fluke)
          Length = 215

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +3

Query: 24 LELVXPPGCRNSARG 68
          LELV PPGCRNSARG
Sbjct: 11 LELVDPPGCRNSARG 25


>UniRef50_Q589S4 Cluster: HMG protein TCF/LEF; n=1; Dugesia
          japonica|Rep: HMG protein TCF/LEF - Dugesia japonica
          (Planarian)
          Length = 263

 Score = 34.3 bits (75), Expect = 3.2
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 27 ELVXPPGCRNSARGYC 74
          +LV PPGCRNSARG C
Sbjct: 5  QLVDPPGCRNSARGEC 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,316,422
Number of Sequences: 1657284
Number of extensions: 8812173
Number of successful extensions: 13036
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13035
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)