Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30144
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 151 3e-38
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 151 3e-38
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 46 3e-06
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 1.9
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 2.5
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 5.7
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 24 7.6
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 24 10.0
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 24 10.0
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 151 bits (367), Expect = 3e-38
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
VEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIP
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIP 116
Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
GVRFKVVKVA V L AL+ EKKE+P
Sbjct: 117 GVRFKVVKVAGVGLSALFHEKKEKP 141
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 151 bits (367), Expect = 3e-38
Identities = 71/85 (83%), Positives = 77/85 (90%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
VEAKQPNSAIRKCVRVQLIKNGKKVTAFVP DGCLN ++ENDEVL++GFGRKG A GDIP
Sbjct: 57 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIP 116
Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
GVRFKVVKVA V L AL+ EKKE+P
Sbjct: 117 GVRFKVVKVAGVGLSALFHEKKEKP 141
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 45.6 bits (103), Expect = 3e-06
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
V+ K+PNSA+RK RV+L G+ VTA++P G ++ +E+ VL+ G GR D P
Sbjct: 61 VKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLLRG-GR----AQDCP 112
Query: 181 GVRFKVVK 204
GV++ VV+
Sbjct: 113 GVQYHVVR 120
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.2 bits (55), Expect = 1.9
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 140 ATSTSSFSSMWFRQPS---RGTNAVTFFPFLMSCTRTHLRMA 24
++S S F S+WFRQ + AVT+F MS HL A
Sbjct: 154 SSSVSCFFSLWFRQTNIVWMVFIAVTYFASNMSFFNPHLAEA 195
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.8 bits (54), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 200 TTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSR 90
+++K P + P P P+ AT+TSS +++ PSR
Sbjct: 392 SSVKALPTLEP---PSSPSHATATSSLHTLFHTAPSR 425
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 5.7
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +1
Query: 88 PRDGCLNHIEENDEVLVAGFGRKGHAVG 171
PR+ +++ + ND + + G+G +GH G
Sbjct: 74 PREKLVDYFK-NDTLAIIGYGSQGHGQG 100
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 7.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 361 LLYTIFIMY*DFTFYELINNALPDSRSLITMYTYDLVAPFSLC 233
LL T+ + L + LP S ++ MY Y SLC
Sbjct: 270 LLVTLLVYIVGEYLTNLYMSTLPHSSTVAIMYVYSWTGTVSLC 312
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 23.8 bits (49), Expect = 10.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 350 NIYYVLGFYIL*TYKQRASRQQVTYHNV 267
N ++ LGF L + R S ++V+Y N+
Sbjct: 226 NFFFTLGFMALGVFFFRRSLKKVSYFNL 253
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -1
Query: 255 WSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 136
W L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 130 WYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,254
Number of Sequences: 5004
Number of extensions: 26978
Number of successful extensions: 75
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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