Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30144
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 163 3e-41
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 161 1e-40
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 78 3e-15
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 3e-07
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 29 1.8
05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880 28 2.4
06_02_0164 + 12498614-12498699,12498806-12498842,12499388-124995... 28 3.1
01_01_0357 - 2816650-2817897 27 4.1
06_03_1146 - 28004896-28005554,28005664-28005844 27 7.2
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 27 7.2
12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044 26 9.5
11_06_0186 + 21027581-21028825 26 9.5
09_04_0516 - 18246439-18246582,18246763-18246899,18247067-182470... 26 9.5
04_03_1015 - 21734381-21736534 26 9.5
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 163 bits (397), Expect = 3e-41
Identities = 74/88 (84%), Positives = 81/88 (92%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIP
Sbjct: 56 IEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIP 115
Query: 181 GVRFKVVKVANVSLLALYKEKKERPDHR 264
GVRFKVVKV+ VSLLAL+KEKKE+P R
Sbjct: 116 GVRFKVVKVSGVSLLALFKEKKEKPSRR 143
Score = 161 bits (392), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIP
Sbjct: 226 IEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIP 285
Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
GVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 286 GVRFKVVKVSGVSLLALFKEKKEKP 310
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 161 bits (392), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
+EAKQPNSAIRKC RVQL+KNGKK+ AFVP DGCLN IEENDEVL+AGFGRKGHAVGDIP
Sbjct: 56 IEAKQPNSAIRKCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIP 115
Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
GVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 116 GVRFKVVKVSGVSLLALFKEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 77.8 bits (183), Expect = 3e-15
Identities = 34/48 (70%), Positives = 39/48 (81%)
Frame = +1
Query: 1 VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAG 144
+EAKQPNSAI KC RVQL+KNGKK+ AFVP DGCLN I+EN+ V G
Sbjct: 127 IEAKQPNSAICKCARVQLVKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 3e-07
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +1
Query: 124 DEVLVAGFGRKGHAVGDIPGVRFKVVK 204
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -2
Query: 173 SPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFP 63
+PT P PNP ST SM F+ PS A FP
Sbjct: 3 TPTGNP-NPNPNPSTPFEVSMLFKPPSNAPAAAPIFP 38
>05_07_0053 - 27364449-27365021,27365117-27365352,27365993-27367880
Length = 898
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 155 LRPNPATSTSSFSSMWFRQPSRGT 84
L P+ +T T +FS WFR PS+ T
Sbjct: 196 LPPDGSTVTIAFSERWFRIPSKWT 219
>06_02_0164 +
12498614-12498699,12498806-12498842,12499388-12499544,
12499964-12500181,12500965-12501891
Length = 474
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 291 TAGHLSQCTPMIWSLLFLFVESEERHVGYFYHLKTNSGNVT 169
+ G S C MI++ F+ E + +H LKT+ G +T
Sbjct: 48 SVGSCSPCNSMIYNESFVHTEDQTQHFQGSPELKTSRGKMT 88
>01_01_0357 - 2816650-2817897
Length = 415
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 172 HRRRDLYDRIPPLVLRRFLRCGLGNRHGG 86
H+ ++ DR+PPLVLR + G R G
Sbjct: 175 HQAQEHQDRVPPLVLRHAQQLGRARRVPG 203
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 185 TPGMSPTA*PLRPNPATSTSSFSS 114
TP SP+ P+ P PA +TS+ SS
Sbjct: 184 TPSPSPSVSPMAPAPAPTTSTPSS 207
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 160 DLYDRIPPLVLRRFLRCGLGNRHGGR 83
++Y + P LRR L GLG GG+
Sbjct: 57 EVYRAVGPRFLRRLLNTGLGKVEGGK 82
>12_02_0517 - 19930197-19931585,19932064-19932253,19933887-19934044
Length = 578
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 61 NGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGH-AVGDIPGVRF 192
N KK + R+G L+++ N+E + + F R G A+ D+ R+
Sbjct: 471 NTKKDVMVLQREGILDNLLSNEEEVASFFNRLGRCALVDVSNHRY 515
>11_06_0186 + 21027581-21028825
Length = 414
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -3
Query: 331 DFTFYELINNALPDSRSLITMYTYDLVAPFSLCRERGETRWLLLPP*NELREC 173
+F F + I ++ P + I + ++ S+ R G+ +W LPP + +C
Sbjct: 165 NFLFSKAIVSSDPSGGNFIVVLIHNPHLQLSIARP-GDDKWTWLPPHKDYEDC 216
>09_04_0516 -
18246439-18246582,18246763-18246899,18247067-18247097,
18248097-18248194,18248222-18248291,18248704-18248835,
18249213-18249386
Length = 261
Score = 26.2 bits (55), Expect = 9.5
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 285 GHLSQCTPMIWSLLFLFVESEERHV 211
GH + CTP WS + + ++ + ++V
Sbjct: 44 GHHNLCTPKEWSFIKILIDGKSQNV 68
>04_03_1015 - 21734381-21736534
Length = 717
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 19 NSAIRKCVRVQLIKNGKKVTAFVPRDG 99
+SA+ C + L+ +GK++ A++ R+G
Sbjct: 492 SSALAACANIFLLNHGKQIHAYMIRNG 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,661,985
Number of Sequences: 37544
Number of extensions: 188037
Number of successful extensions: 535
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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