Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30144
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              169   5e-43
SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              126   7e-30
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         33   0.065
SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      27   5.6  
SB_29322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)              26   9.8  
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)                     26   9.8  

>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  169 bits (412), Expect = 5e-43
 Identities = 78/85 (91%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
           VEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIP
Sbjct: 57  VEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIP 116

Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
           GVRFKVVKVANVSLLAL+KEKKERP
Sbjct: 117 GVRFKVVKVANVSLLALFKEKKERP 141


>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  126 bits (304), Expect = 7e-30
 Identities = 55/62 (88%), Positives = 61/62 (98%)
 Frame = +1

Query: 1   VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
           VEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIP
Sbjct: 56  VEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIP 115

Query: 181 GV 186
           G+
Sbjct: 116 GI 117


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 33.5 bits (73), Expect = 0.065
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 10  KQPNSAIRKCVRVQLIKNGKKVTAFVP 90
           K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 242 KKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 136 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPDHRCTL 273
           + G+  KG+ +G IPG+  +   +      + Y     + DH C L
Sbjct: 34  IPGYRLKGYVIGSIPGISVEKCIIKCTKHSSCYSINHHQRDHLCEL 79


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 97  GCLNHIEENDEVLVAGFGRKGHA 165
           G  N +EEN  +LV G GRKG++
Sbjct: 39  GNANLLEENRLILVTGDGRKGYS 61


>SB_29322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 70  KVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 168
           K +  + R  C+  I+END V V  F    H+V
Sbjct: 24  KCSCSIERIKCIGSIDENDSVCVVRFKDGAHSV 56


>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
          Length = 597

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 203 FTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPS 93
           F+ + R+P +SP +    P P  +   F     RQPS
Sbjct: 163 FSRIGRSPIVSPVSREFSPKPTRTVFEFQPQITRQPS 199


>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
          Length = 1381

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 203 FTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPS 93
           F+ + R+P +SP +    P P  +   F     RQPS
Sbjct: 108 FSRIGRSPIVSPVSREFSPKPTRTVFEFQPQITRQPS 144


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,375
Number of Sequences: 59808
Number of extensions: 226860
Number of successful extensions: 507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)