Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30144
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   163   4e-41
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   163   4e-41
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    34   0.040
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein       28   2.6  
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P...    27   4.6  
At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containi...    27   6.1  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    27   6.1  
At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containi...    27   6.1  
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P...    26   8.0  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  163 bits (396), Expect = 4e-41
 Identities = 74/85 (87%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
           +EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIP
Sbjct: 56  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 115

Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
           GVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 116 GVRFKVVKVSGVSLLALFKEKKEKP 140


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  163 bits (396), Expect = 4e-41
 Identities = 74/85 (87%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   VEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIP 180
           +EAKQPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIP
Sbjct: 56  IEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIP 115

Query: 181 GVRFKVVKVANVSLLALYKEKKERP 255
           GVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 116 GVRFKVVKVSGVSLLALFKEKKEKP 140


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 33.9 bits (74), Expect = 0.040
 Identities = 24/65 (36%), Positives = 38/65 (58%)
 Frame = +1

Query: 10  KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 189
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+  VL+ G GR    V D PGV+
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94

Query: 190 FKVVK 204
              ++
Sbjct: 95  SHCIR 99


>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
          Length = 356

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 149 PNPATSTSSFSSMWFRQP-SRGTNAVTFFPFLMSCTR 42
           P PA+ST SFSS     P S     ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336


>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At1g25886, At4g03300
          Length = 1312

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 58  KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 219
           K  KK +  VP+      + E D+V   GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873


>At4g33170.1 68417.m04725 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 990

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 212 TCLSSLSTKRKRSDQIIGVHCDK*PAVGKRVVYKFIKCKILVHNKYCV 355
           +CL++L   R+     + ++C   P VG  +V  + KC   + + YC+
Sbjct: 629 SCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCG-SIDDAYCL 675


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 230 RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGTNAVTFFPFL 57
           +A +  L  F +LKR   ++ +  PL     TS S FSS        G N + F  F+
Sbjct: 460 KASQVDLDVFLSLKRLVSLALSGIPLSTTNITSDSEFSSHLEYLELSGCNIIEFPEFI 517


>At1g26460.1 68414.m03227 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 630

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -2

Query: 212 LATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWFRQPSRGT 84
           LAT +T         T+ PL PNPAT +  +   W R P   T
Sbjct: 43  LATESTDHDPSNHQSTSTPLPPNPATGSPLYQENW-RSPIPNT 84


>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1383

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 58  KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 219
           K  KK +  VP+      + E D+    GF  K   V D+P  + +VV +  NVS
Sbjct: 819 KEEKKSSPKVPKKVKKQLVYEQDDAHPHGFKAKTVLVPDVPAQQIEVVIRAGNVS 873


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,693,179
Number of Sequences: 28952
Number of extensions: 145575
Number of successful extensions: 410
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)