Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30142
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    28   0.59 
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   0.59 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   1.8  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   5.5  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   5.5  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    24   7.2  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 200 FHSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 42
           F  +    T A STA+VY P   T+ S     ++ +G T  TA ST  + V+S
Sbjct: 605 FQEYCWDGTLATSTASVYDP---TVMSAATTSRAPSGTTSGTASSTTSSSVAS 654


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -3

Query: 200 FHSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSS 42
           F  +    T A STA+VY P   T+ S     ++ +G T  TA ST  + V+S
Sbjct: 605 FQEYCWDGTLATSTASVYDP---TVMSAATTSRAPSGTTSGTASSTTSSSVAS 654


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +1

Query: 4   TATQHPRTNEKTVELT-NVPPVLTAVQTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVD 180
           T+T  P T   T  +T  VPP  T+  +  P     S+    S P P   T    S  + 
Sbjct: 287 TSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346

Query: 181 ERGQLWNTGPRTSIV 225
             G   +T P T  V
Sbjct: 347 PTGN--STTPVTPTV 359


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 140 GLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSSTVFSLVLG 18
           GLG L +    + S T A +   +S  G  V   +++ +LG
Sbjct: 377 GLGILLTLRGSEGSFTVALIAQVISIAGIFVIPNIWAYILG 417


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 215 LRLSSRLTTIRVRSVQFAQQQRKVLILRFC-*CSFNNVTIRK 337
           LRLS+R  TIR R       QR ++IL  C  CS + V I +
Sbjct: 81  LRLSNRKGTIRWRYHSVPCVQRSMIILYSCFLCSKHAVLISR 122


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 204 RPQDFDCHQGSRRSESEVSNSHNS 275
           R +  D  + S++ ES+ SNSH+S
Sbjct: 11  RGKSQDTQKSSKKKESKKSNSHDS 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,180,951
Number of Sequences: 5004
Number of extensions: 19819
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)