Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30142
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0220 - 6531255-6532667 31 0.42
11_01_0404 + 3071412-3071464,3073572-3074970 30 0.74
06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559... 29 1.3
03_05_0168 - 21466431-21466445,21467053-21467160,21467222-214673... 29 1.3
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 28 3.0
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940... 28 3.0
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 3.0
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236... 28 3.0
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 28 3.0
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544 27 3.9
04_01_0019 - 305560-305628,305972-306283 27 3.9
12_02_1010 + 25269721-25269787,25270162-25270308,25270407-252707... 27 5.2
12_02_0682 - 21923334-21923626,21923684-21923733,21923982-219240... 27 5.2
06_03_0069 + 16179765-16179936,16179982-16180256 27 5.2
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 27 5.2
12_02_0058 + 13015401-13016654 27 6.9
07_03_0676 + 20618677-20618840,20618938-20619502 27 6.9
03_05_0840 + 28101420-28101779,28101878-28101991,28102131-281022... 27 6.9
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 27 6.9
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785... 27 6.9
11_06_0030 - 19415263-19415388,19415649-19415728,19416196-194162... 26 9.1
06_03_0818 - 24963652-24964983 26 9.1
04_02_0032 - 8906691-8906810,8906894-8907034,8907140-8907435,890... 26 9.1
>03_02_0220 - 6531255-6532667
Length = 470
Score = 30.7 bits (66), Expect = 0.42
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 52 NVPPVLTAVQTVAPVRDFFSAQQLV-SVPSPGLYT-VAVESAFVD 180
+VP V+T+V +A DF A+QL+ +P G T VAV +A +D
Sbjct: 186 SVPLVVTSVHKLATAGDFVGARQLIEKMPEFGCVTNVAVYTALLD 230
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 29.9 bits (64), Expect = 0.74
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = -2
Query: 237 VSLDDNRSPGAGVPQLAALVHERRLHGHRVQSRAGHADQLLGGEEVSDGRDRLHRGQHR 61
V+ DN S G + Q + H H H ++ ++ E+ +DG+D+ HR
Sbjct: 102 VTEPDNISDGVQLGQHGKIAHHHHHHRHHSKNHGSDEEEHDMNEDAADGKDKKGSPWHR 160
>06_03_0813 -
24853119-24854480,24854711-24855442,24855556-24855962,
24856091-24856359,24856681-24856733,24857019-24857078,
24857309-24857363,24858080-24858155,24858225-24858801
Length = 1196
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -2
Query: 195 QLAALVHERRLHGHRVQSRAG 133
+LAAL H RR+HG V+SR G
Sbjct: 911 RLAALEHGRRVHGVMVKSRVG 931
>03_05_0168 -
21466431-21466445,21467053-21467160,21467222-21467365,
21467778-21467846,21467928-21468071,21468409-21468565,
21468671-21468767,21469015-21469297,21469382-21469507,
21470098-21470178,21471990-21472072,21472393-21472478,
21473329-21473422,21473516-21473681,21473777-21473851,
21474082-21474157,21474259-21474347
Length = 630
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 221 IEVLGPVFHSWPRSSTNADSTATVYSPGLG 132
I VL P H PR + + T ++PG+G
Sbjct: 210 IVVLSPCLHMMPRQKSEGSAVPTPWAPGMG 239
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 149 TRWP-WSRRSWTSAASCGTPAPGLRLSSRLTTIRVRSV 259
TR P WS SW+S AS +P PG S +RSV
Sbjct: 62 TRRPSWS--SWSSTASRSSPPPGRGAPSAAAAAELRSV 97
>10_06_0004 -
9407954-9408007,9408219-9408386,9408441-9408542,
9408710-9408934,9409889-9410047,9411768-9411900,
9412827-9413758,9413842-9413987,9415863-9416082
Length = 712
Score = 27.9 bits (59), Expect = 3.0
Identities = 15/62 (24%), Positives = 26/62 (41%)
Frame = +1
Query: 106 FSAQQLVSVPSPGLYTVAVESAFVDERGQLWNTGPRTSIVIKAHDDPSPKCPIRTTAEEG 285
F L+S PG ++ + DE W+ P +I ++ + P+ C + E
Sbjct: 402 FGRYLLISCSRPGTQISNLQGIWNDETSPPWDAAPHPNINLQMNYWPALPCNLSECQEPL 461
Query: 286 FD 291
FD
Sbjct: 462 FD 463
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -3
Query: 182 SSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSST 39
+ +N+ S +V G+ +S W+ S +G+T+ + + SS+
Sbjct: 394 AESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIGVASNAGSSS 441
>04_03_0995 +
21521877-21521977,21522152-21522217,21523630-21523696,
21523959-21524041,21524318-21524359,21524614-21524733,
21524806-21524869,21525028-21525113,21525217-21525299,
21525994-21526070,21526549-21526567,21526568-21526661,
21527042-21527087
Length = 315
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 367 YALIAFININFPYRDIVKRTL 305
Y+L AFI++N Y DI K L
Sbjct: 109 YSLYAFISLNLKYNDIAKHAL 129
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 27.9 bits (59), Expect = 3.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 133 PSPGLYTVAVESAFVDERGQLWNTGPRTSIVIKAHDDPSPKCPIRTTAEEGFDPEIL 303
PSP A+ AF Q W T + I + AH D + + IR T EE ++ ++
Sbjct: 11 PSPAEDADALLKAF-----QGWGTDEQAVIGVLAHRDATQRKQIRLTYEENYNENLI 62
>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
Length = 1274
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 16 HPRTNEKTVELTNVPPVLTAVQ 81
H N+K VEL N+PP LT+++
Sbjct: 1113 HISFNDKMVELQNLPPSLTSLE 1134
>04_01_0019 - 305560-305628,305972-306283
Length = 126
Score = 27.5 bits (58), Expect = 3.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -2
Query: 252 RTRIVVSLDDNRSPGAGVPQLAALVHERRLHGHRVQSRAGHAD--QLLGGEEVSDGR 88
R R + S D G P L+ + HR SR+GH D +GG++V + R
Sbjct: 53 RWRGLASSTDGEDDGRNPPSLSPTKPDPPFFHHRHLSRSGHYDVGSEIGGKKVKNVR 109
>12_02_1010 +
25269721-25269787,25270162-25270308,25270407-25270783,
25271273-25271407,25272059-25272211,25272761-25272862,
25273380-25273550,25273659-25273738,25273860-25273917
Length = 429
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 199 NTGPRTSIVIKAHDDPSPKCPIRTTAEEGFDPEI 300
+TGPRT+ ++ A DD S ++ E G DP I
Sbjct: 207 STGPRTTPLVLAVDDGSADI-VKILLEAGADPNI 239
>12_02_0682 -
21923334-21923626,21923684-21923733,21923982-21924041,
21924081-21924235
Length = 185
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 114 GGEEVSDGRDRLHRGQHRRHVGQLHRLLVG 25
GG + + R+R Q RR +G+ HR+ G
Sbjct: 85 GGHDEEETRERREELQRRRQLGRRHRITQG 114
>06_03_0069 + 16179765-16179936,16179982-16180256
Length = 148
Score = 27.1 bits (57), Expect = 5.2
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 168 RLHGHRVQSRAGHADQ--LLGGEEVSDGRDRLHRGQHRRHVGQLHRL 34
RLH HRV AD+ L G E R+ RGQ R VG+ H L
Sbjct: 76 RLHRHRVGVERAAADRGDLRHGRERHP--QRVGRGQGHRQVGEDHYL 120
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 197 HSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATV 81
H W + +T+T+YS TL W + TG+ V
Sbjct: 350 HRWLSRRGLSRATSTLYSKSSNTLKQIWRRRSMWTGSEV 388
>12_02_0058 + 13015401-13016654
Length = 417
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = +1
Query: 208 PRTSIVIKAHDDPSPKCPIRTTAEEGF 288
P + V H P P P+ T E+GF
Sbjct: 284 PAAASVTGGHHTPQPSVPVPATPEQGF 310
>07_03_0676 + 20618677-20618840,20618938-20619502
Length = 242
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Frame = -2
Query: 225 DNRSPGAGVPQLAALVHERRLHGHRVQSRAGH----ADQLLGGEEVSDGRDRLHR 73
+ R AG + ER GHR + RAG GG+ + R R HR
Sbjct: 170 ERRLEAAGAEEREGRRRERASGGHRAKRRAGRGGGGGGDAGGGDGAAGARSRRHR 224
>03_05_0840 +
28101420-28101779,28101878-28101991,28102131-28102229,
28102800-28102874,28103311-28103378,28104015-28104087
Length = 262
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +1
Query: 100 DFFSAQQLVSVPSPGLYTVAVESAFVDERGQLWNTGPRTSIVIKAHDDPSPKCPI 264
D+F L+S+ +PG +E ++DE + + G + ++ I DP+ + P+
Sbjct: 209 DYFKIFNLISIKAPGSGKGELEITYLDEELRA-SRGDKGNLFILKMVDPTYRVPL 262
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/46 (30%), Positives = 20/46 (43%)
Frame = +1
Query: 196 WNTGPRTSIVIKAHDDPSPKCPIRTTAEEGFDPEILLMFF*QCHDK 333
W T + I I AH D + + IR E + E+L + H K
Sbjct: 27 WGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEELLRALNDEIHGK 72
>01_06_0997 +
33676441-33676758,33678223-33678314,33678443-33678540,
33678824-33678979,33679106-33679731,33679826-33679896,
33679987-33680241,33680337-33680454,33680595-33680766,
33680854-33681395
Length = 815
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 152 RWPWSRRSWTSAASCGTPAPGLRLSSRL 235
RW W T A GTP G +S+ L
Sbjct: 64 RWEWHGLRRTKAGRRGTPVQGFHMSAEL 91
>11_06_0030 -
19415263-19415388,19415649-19415728,19416196-19416232,
19416338-19416460,19417195-19417242,19417335-19417378,
19417461-19417506,19417581-19417623,19418329-19418422,
19418503-19418604,19419936-19420014,19420698-19420964
Length = 362
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +2
Query: 152 RWPWSRRSWTSAA---SCGTPAPGLR 220
RWPW RS AA S G PA G R
Sbjct: 6 RWPWPWRSQRRAARMLSSGEPAAGRR 31
>06_03_0818 - 24963652-24964983
Length = 443
Score = 26.2 bits (55), Expect = 9.1
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 258 TLRTRIVVSLDDNRSPGAGVPQLAALVHERRLHGHR 151
+LR + LD N G P LA + RLHG+R
Sbjct: 335 SLRNVTYLGLDGNLLEGEVPPALAKMAGRVRLHGNR 370
>04_02_0032 -
8906691-8906810,8906894-8907034,8907140-8907435,
8907524-8907815
Length = 282
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 140 GLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSSTVFSLVLGCWVAV 3
G+GTL WA CTA +GG + + F L+L V+V
Sbjct: 72 GVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSV 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,744,255
Number of Sequences: 37544
Number of extensions: 169626
Number of successful extensions: 715
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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