Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30142
(388 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4) 54 4e-08
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 28 3.1
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7) 28 3.1
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_14962| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66) 27 5.3
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021) 27 7.1
SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_17413| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_53201| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 26 9.3
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_14904| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_11172| Best HMM Match : LTXXQ (HMM E-Value=1.9) 26 9.3
>SB_43703| Best HMM Match : Ubiq_cyt_C_chap (HMM E-Value=5.4)
Length = 487
Score = 54.0 bits (124), Expect = 4e-08
Identities = 24/62 (38%), Positives = 37/62 (59%)
Frame = +1
Query: 64 VLTAVQTVAPVRDFFSAQQLVSVPSPGLYTVAVESAFVDERGQLWNTGPRTSIVIKAHDD 243
V + QTV P D+FSA L+S + Y V V ++ +D W+TGP+ S+++KA +
Sbjct: 379 VTSLEQTVTPHNDYFSAHFLLSFAAAATYDVTVTTSVIDSSSARWDTGPQNSLLVKASEA 438
Query: 244 PS 249
PS
Sbjct: 439 PS 440
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 19 PRTNEKTVELTNVPPVLTAVQTVAP 93
P T + V N PP L+ VQTVAP
Sbjct: 478 PYTTPQGVSTVNPPPGLSLVQTVAP 502
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +1
Query: 19 PRTNEKTVELTNVPPVLTAVQTVAP 93
P T + V N PP L+ VQTVAP
Sbjct: 445 PYTTPQGVSTVNPPPGLSLVQTVAP 469
>SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7)
Length = 472
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 229 KAHDDPSPKCPIRTTAEEGFDP 294
K HDDPSP P T F P
Sbjct: 271 KGHDDPSPSPPSNNTMHATFSP 292
>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -2
Query: 177 HERRLHGHRVQSRAGHADQLLGGEEVSDGRDRLHRGQHRRHVGQLHRLLVGPRMLG 10
HER H R R+ H E S R R + RH + H LVG R LG
Sbjct: 69 HERSRHETRQHERSRHKTSR---HETS--RHEKSRHERSRHETRQHETLVGMRQLG 119
>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.5 bits (58), Expect = 4.0
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = -2
Query: 180 VHERRLHGHRVQSRAGHADQLLGGEEVSDGRDRLHRGQHRRHVGQLHRLLVGPRMLGG 7
VH+++ R++SR A + G + + R ++ + QHR V +L L+VG + GG
Sbjct: 449 VHDKKWSHQRLESRPTMARKRQKGGKQDNKRKQVKKSQHR--VNRL--LMVGEKKSGG 502
>SB_14962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 352 FININFPYRDIVKRTLAKSQDQNLPLLLCELDTSDSDRR 236
F I F RD R + LP L C++D SD++
Sbjct: 111 FYRIEFQGRDAFSRNIRAYISTILPFLKCKMDVQVSDKK 149
>SB_47624| Best HMM Match : Caudal_act (HMM E-Value=0.66)
Length = 424
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = -3
Query: 212 LGPVFHSWPRSSTNADSTATVYSPGLGTL---TSCWAEKKSRTGATVCTAVSTGGTLVSS 42
LGP + + ++STAT + P TL S A + T +V + + SS
Sbjct: 331 LGPPTSTSQTQPSTSNSTATTWPPATSTLLQSASSTATSSNSTSTATSMSVKSRSHIASS 390
Query: 41 TV 36
TV
Sbjct: 391 TV 392
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.1 bits (57), Expect = 5.3
Identities = 20/56 (35%), Positives = 23/56 (41%)
Frame = -2
Query: 177 HERRLHGHRVQSRAGHADQLLGGEEVSDGRDRLHRGQHRRHVGQLHRLLVGPRMLG 10
HER H R R+ H E S R R + RH + H LVG R LG
Sbjct: 109 HERSRHETRQHERSRHKTSR---HEKS--RHETSRHERSRHETRQHETLVGMRQLG 159
>SB_20459| Best HMM Match : 7tm_2 (HMM E-Value=0.00021)
Length = 397
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 161 TATVYSPGLGTLTSCW 114
+ATVY G GT T CW
Sbjct: 10 SATVYHEGYGTQTFCW 25
>SB_56285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1127
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 161 TATVYSPGLGTLTSCW 114
+ATVY G GT T CW
Sbjct: 762 SATVYHEGYGTQTFCW 777
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 149 TRWPWSR-RSWTSAASCGTPAPGLRLSSR 232
T+ WS+ + WT+ + CG PG+R+ +R
Sbjct: 630 TKVEWSKWKPWTACSKCG--VPGVRMRNR 656
>SB_17413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 212 LGPVFHSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGAT 84
LGP+ + RS+TN + TA+++ T + KS T A+
Sbjct: 96 LGPIASNTARSNTNTNRTASMWETSNSTTNPTESVAKSTTLAS 138
>SB_53201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 163 ESAFVDERGQLWNTGP--RTSIVIKAHDDPSPKCPIRTTAE 279
E D L +TG R S+ + +DD +C +RTTA+
Sbjct: 178 ECDLCDSESDLRDTGSDLRDSVETRYNDDNGHRCRVRTTAK 218
>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1350
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 176 WTSAASCGTPAPGLRLSSRLTTIRVR 253
++S + C T PGL L R ++RVR
Sbjct: 874 FSSLSECATQVPGLVLVHRALSVRVR 899
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 26.2 bits (55), Expect = 9.3
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Frame = +1
Query: 49 TNVPPVLTAVQTVAPVRDFFS---AQQLVSVPSPGLYTVAVESAFVDERGQLWNTGPRTS 219
T PP T V T +P + FF +L + G V F+D+ +N
Sbjct: 806 TTSPPTTTPVPT-SPGKSFFFHFVVGRLWYSNTDGNIDVIEMLYFIDDPCAGFNCDSPPY 864
Query: 220 IVIKAHDDPSPKCPIRTTAEEGFDP 294
K DD P C E+ +DP
Sbjct: 865 STCKVQDDDKPACVCPPKCEKVYDP 889
>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = -3
Query: 188 PRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTG 60
PR+ N + T S GT+++ EKKS TG+TV S G
Sbjct: 779 PRAIANPRTGETTGSTSQGTISTA-VEKKS-TGSTVTVRASIG 819
>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 26.2 bits (55), Expect = 9.3
Identities = 23/85 (27%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Frame = +1
Query: 49 TNVPPVLTAVQTVAPVRDFFS---AQQLVSVPSPGLYTVAVESAFVDERGQLWNTGPRTS 219
T PP T V T +P + FF +L + G V F+D+ +N
Sbjct: 74 TTSPPTTTPVPT-SPGKSFFFHFVVGRLWYSNTDGNIDVIEMLYFIDDPCAGFNCDSPPY 132
Query: 220 IVIKAHDDPSPKCPIRTTAEEGFDP 294
K DD P C E+ +DP
Sbjct: 133 STCKVQDDDKPACVCPPKCEKVYDP 157
>SB_14904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 26.2 bits (55), Expect = 9.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 282 FLCCCANWTLRTRIVVSL 229
F CC + WT +RI+ SL
Sbjct: 55 FFCCTSLWTTYSRIITSL 72
>SB_11172| Best HMM Match : LTXXQ (HMM E-Value=1.9)
Length = 142
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 176 WTSAASCGTPAPGLRLSSRLTTIRVRSVQFAQQQRK 283
W + S G+ PG RL R +T+RV ++ QR+
Sbjct: 7 WDESESSGS-RPGTRLPPRRSTLRVSHLRDTPSQRR 41
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,507,102
Number of Sequences: 59808
Number of extensions: 171895
Number of successful extensions: 732
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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