Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30142
         (388 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66310.1 68414.m07530 F-box family protein contains F-box dom...    31   0.36 
At4g28700.1 68417.m04101 ammonium transporter, putative similar ...    29   1.1  
At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein           29   1.4  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    29   1.4  
At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family pr...    27   4.4  
At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (CO...    27   5.8  
At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly ide...    26   7.6  
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa...    26   7.6  
At3g01490.1 68416.m00073 protein kinase, putative similar to ATM...    26   7.6  

>At1g66310.1 68414.m07530 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 442

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -1

Query: 364 ALIAFININFPYRDIVKRTLAKSQDQNLPLLLCELDTSDSDRRE 233
           +L+  I +N P +D+VK ++  S+ +NL  L+  LD   SD  E
Sbjct: 27  SLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSSDFTE 70


>At4g28700.1 68417.m04101 ammonium transporter, putative similar to
           SP|O04161 Ammonium transporter 1, member 2 (LeAMT1;2)
           {Lycopersicon esculentum}; contains Pfam profile
           PF00909: Ammonium Transporter Family
          Length = 504

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
 Frame = -3

Query: 266 RIGHFGLGSS*ALM-----TIEVLGPVFHSWPRSSTNADSTATVYSPGLGTLTSCWAEKK 102
           RIG FG+G     +     T+ VLG     +     N  S AT++     T  S +  + 
Sbjct: 231 RIGRFGVGGKPVTLRGHSATLVVLGTFLLWFGWYGFNPGSFATIFKAYGETPGSSFYGQW 290

Query: 101 SRTGATVCTAVSTGGTLVSSTVFS--LVLGCW 12
           S  G T  T    G T   +T+F   L+ G W
Sbjct: 291 SAVGRTAVTTTLAGCTAALTTLFGKRLIDGYW 322


>At5g49360.1 68418.m06108 glycosyl hydrolase family 3 protein
          Length = 774

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 93  GRDRLHRGQHRRHVGQL-HRLLVGPRM 16
           G+ R+  G+H+ H+G L H +LV P++
Sbjct: 748 GKRRIPMGEHKLHIGDLKHTILVQPQL 774


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 163 ESAFVDERGQLWNTGPRTSIVIKAHDDPSPKCPIRTTAEEGFDPE 297
           ESA  + R Q   T PRT     A  D  P+ PI  +A  G  P+
Sbjct: 243 ESAATERRPQTPETRPRTPEHRSAIPDTRPRTPIHESAATGRRPQ 287


>At5g41315.1 68418.m05021 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain ;annotation temporarily based on
           supporting cDNA gi|17224394|gb|AF246291.1|AF246291
          Length = 637

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 200 FHSWPRSSTNADSTATVYSPGLGTL 126
           F  W +SS+++  TATV +P  G L
Sbjct: 388 FTRWKKSSSSSSGTATVTAPSQGML 412


>At3g02380.1 68416.m00223 zinc finger protein CONSTANS-LIKE 2 (COL2)
           identical to putative flowering-time gene CONSTANS
           (COL2) GB:AAB67879 GI:1507699 SP:Q96502 (Arabidopsis
           thaliana)
          Length = 347

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 13  QHPRTNEKTVELTNVPPVLTAVQTVAPV 96
           QHPRT ++T++  + PP    VQ + P+
Sbjct: 250 QHPRTTKETIDQLSGPPT-QVVQQLTPM 276


>At5g59030.1 68418.m07395 copper transporter 1 (COPT1) nearly
           identical to SP|Q39065 Copper transporter 1 (COPT1)
           {Arabidopsis thaliana}
          Length = 170

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -3

Query: 203 VFHSWPRSSTNADSTATVYSPGLGTLTSCWAEKKSRTGATVCTAVSTGGTLVSSTVFSLV 24
           +F  WP +S+   +   ++   L  LT   A      G+T  +A    G L+ + V++L 
Sbjct: 55  LFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAG-LIQTAVYTLR 113

Query: 23  LG 18
           +G
Sbjct: 114 IG 115


>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
           family protein  ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 491

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 177 HERRLHGHRVQSRAGHADQLLGGEEVSD-GRDRLHRG 70
           H    H H    R G++ ++  G+E+S  GRD   RG
Sbjct: 13  HVSHQHNHSPLQRDGNSAEIAQGQELSSPGRDLWRRG 49


>At3g01490.1 68416.m00073 protein kinase, putative similar to ATMRK1
           [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 411

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -2

Query: 231 LDDNRSPGAGVPQLAALVHERRLHGHRVQSRAGHADQLLGGEEVSDGRDRLHRGQHRRHV 52
           + +    G GV  + A   + +    ++Q     A  +   + +SDG D ++  +H ++ 
Sbjct: 1   MKEKAESGGGVGYVRADQIDLKSLDEQLQRHLSKAWTMEKRKSLSDGEDNVNNTRHNQN- 59

Query: 51  GQLHRLLVGPR-MLGGGH 1
              HR LV  R +LGGG+
Sbjct: 60  NFGHRQLVFQRPLLGGGY 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,545,692
Number of Sequences: 28952
Number of extensions: 118665
Number of successful extensions: 462
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)