Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30141
         (685 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0RN41 Cluster: Serine transporter; n=2; Campylobacter|...    35   2.1  
UniRef50_Q55LE9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.8  
UniRef50_A5K0C1 Cluster: ATP dependent RNA helicase, putative; n...    34   3.7  
UniRef50_Q7M561 Cluster: Replicase/helicase/endonuclease; n=16; ...    33   6.5  

>UniRef50_A0RN41 Cluster: Serine transporter; n=2;
           Campylobacter|Rep: Serine transporter - Campylobacter
           fetus subsp. fetus (strain 82-40)
          Length = 413

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = +2

Query: 386 FSWSVWYLLPQSAFQYEHVF*HKTTYISNL*YHLELYIYINCNLKYVCMRWIFW---LTM 556
           F  ++W+ LP  AF +EH     T  IS     ++ + Y + +  Y C + +F+   L +
Sbjct: 190 FGITIWFALPVLAFAFEH-----TPAISTFALSMQRH-YGDSHKDYKCNQILFYNAGLLL 243

Query: 557 FFAPLFVVE*LF*TFRNVFMGLAEEGLMVL 646
           FF   FV+  +    RN F+  A++ + ++
Sbjct: 244 FFVMFFVISCVMSLDRNDFLLAAQQNIPIV 273


>UniRef50_Q55LE9 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 472

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = -3

Query: 611 THYEKFKKAIQLQTKVQKTWSTKISTSYIHILSCNLYIYIVQDDITDLKYMLFYVRKHAH 432
           T++  FK+ +Q+Q  +Q+    KI T  +HI   N   +    D+TD  ++L ++++   
Sbjct: 287 TNFCSFKRGLQIQYNLQRIEGEKIGTWRLHISDHNFLEWCRSHDMTDDLHLLRHIQQATK 346

Query: 431 I 429
           I
Sbjct: 347 I 347


>UniRef50_A5K0C1 Cluster: ATP dependent RNA helicase, putative; n=2;
           Plasmodium|Rep: ATP dependent RNA helicase, putative -
           Plasmodium vivax
          Length = 810

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 612 NTLRKVQKSYSTTNKGAKNMVNQNIHLIHTYFKLQFIYIYSSR 484
           N L    K+Y  T K  KN++N  ++ +HT    +F YI  SR
Sbjct: 286 NKLEFYIKNYKNTKKNEKNVMNNILNCVHTIVVDEFDYIVESR 328


>UniRef50_Q7M561 Cluster: Replicase/helicase/endonuclease; n=16; Danio
            rerio|Rep: Replicase/helicase/endonuclease - Danio rerio
            (Zebrafish) (Brachydanio rerio)
          Length = 2181

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 20/68 (29%), Positives = 32/68 (47%)
 Frame = -3

Query: 587  AIQLQTKVQKTWSTKISTSYIHILSCNLYIYIVQDDITDLKYMLFYVRKHAHIEMQIVAT 408
            A+ L+   ++TW    +   +   + N+ I  + D  + + YML YV K  H EM     
Sbjct: 1109 AVLLKRDPKETWVNGYNPDLLRAWNANMDIQYILDAYSCIMYMLSYVSKPEH-EMSGFLK 1167

Query: 407  NTIHSKRK 384
            N I S R+
Sbjct: 1168 NVIQSVRE 1175


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,017,720
Number of Sequences: 1657284
Number of extensions: 9573469
Number of successful extensions: 27137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27110
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)