Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30141
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...    27   3.3  
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...    27   3.3  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   4.4  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   5.8  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    25   7.7  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.7  

>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 676 VVPPSVLTGIQHH*AFFSEAHKHITKSSKKLFN 578
           +V   +L    HH  F  E   H T+S+ +L+N
Sbjct: 247 IVKEEILENEDHHINFQCELESHFTQSANELYN 279


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 149 INDKKKLNISGKMKKKMISEYNSF 220
           ++D KKLN + K+ KK+  +Y++F
Sbjct: 86  VDDLKKLNKNKKLVKKLAKKYDAF 109


>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +2

Query: 149 INDKKKLNISGKMKKKMISEYNSF 220
           ++D KKLN + K+ KK+  +Y++F
Sbjct: 86  VDDLKKLNKNKKLVKKLAKKYDAF 109


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -3

Query: 680 GGGTTQCTHRDPTPLSLL-----QRGP*THYEKFKKAIQL 576
           GG T  CTH+D   L  +     +RG  + +  FKK I L
Sbjct: 612 GGRTLSCTHKDIFDLQNILRYCDERGDFSSFPSFKKLISL 651


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = -3

Query: 626 QRGP*THYEKFKKAIQLQTKVQKTWSTKISTSYIHILSCNLYI 498
           + GP   +++ +  I+++ K ++  + +    +IH   C+ YI
Sbjct: 37  KNGPACLFKRVENVIEMEPKTEQMSTGRFIVRHIHCCRCHTYI 79


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 357 H*LIHSLNSFSLGVYGICCHNLHFNMSMFSNIKQHIFQICDIILNYI 497
           H L   LN+   G  G+C  N +FN+ +F   ++ I ++  ++L  I
Sbjct: 413 HRLKIDLNAKQWGATGVCILNANFNLVIFEAGQKAIKKLKRLMLERI 459


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 149 INDKKKLNISGKMKKKMISEYNSF 220
           IN K  LNI  ++  K ISE NS+
Sbjct: 82  INKKSPLNIPDEVWTKFISEVNSY 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,177
Number of Sequences: 5004
Number of extensions: 45899
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)