Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30141
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    28   5.4  

>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
            B0496.3a protein.
          Length = 1551

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
 Frame = -2

Query: 672  YHPVYSQGSNTIKPS------SARPINTLRKVQKSY-STTNKG 565
            YHP  + G+++ +PS      S RP+  LR+ ++SY S+TN G
Sbjct: 1206 YHPTGTTGASSYRPSSYYTSASDRPVTGLRRPEESYTSSTNYG 1248


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
            B0496.3b protein.
          Length = 1592

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
 Frame = -2

Query: 672  YHPVYSQGSNTIKPS------SARPINTLRKVQKSY-STTNKG 565
            YHP  + G+++ +PS      S RP+  LR+ ++SY S+TN G
Sbjct: 1247 YHPTGTTGASSYRPSSYYTSASDRPVTGLRRPEESYTSSTNYG 1289


>Z67995-5|CAA91945.2|  176|Caenorhabditis elegans Hypothetical
           protein M153.3 protein.
          Length = 176

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 408 CCHNLHFNMSMFSN 449
           CCH+ HFNM MF++
Sbjct: 68  CCHSCHFNMDMFTS 81


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 572 TKVQKTWSTKISTSYIHILSCNLYIYI 492
           T+  KT   +I TS++H +SCNL   I
Sbjct: 400 TRYGKTRERRILTSFMHYVSCNLLFII 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,649
Number of Sequences: 27780
Number of extensions: 250292
Number of successful extensions: 713
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)