Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30141
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17270.1 68415.m01995 mitochondrial substrate carrier family ...    29   2.2  
At4g27654.1 68417.m03976 expressed protein                             27   8.8  

>At2g17270.1 68415.m01995 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 309

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 375 LNSFSLGVYGICCHNLHFNMSMFSNIKQHI 464
           L  F  G++ + C NL F+M MFS  +Q +
Sbjct: 162 LAGFHRGLFPLWCRNLPFSMVMFSTFEQSV 191


>At4g27654.1 68417.m03976 expressed protein
          Length = 67

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 197 FFFSFFQKYLIFFCRLLYKFKAN 129
           FFF FF  +LI FC L   FK N
Sbjct: 40  FFFLFFTTFLIEFCFLHTFFKIN 62


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,505,331
Number of Sequences: 28952
Number of extensions: 208490
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)