Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30139
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces...    59   5e-10
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    26   4.2  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   5.5  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   5.5  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    26   5.5  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    25   7.3  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     25   9.6  

>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 27/63 (42%), Positives = 43/63 (68%)
 Frame = +1

Query: 256 VTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKEKADQVE 435
           +T +PS R +L  G Y Y++ + VV++ N++TS+GPGTA  FGL L+E +  K+K + V 
Sbjct: 127 ITGHPSVRGQLEEGGYKYLD-QPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAVY 185

Query: 436 KGM 444
           K +
Sbjct: 186 KSL 188



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 17  VLCSRQVTLVPDKSLTEALAEK---QQYDAVILPGGLEGSDSLSKSEKVGALLKD 172
           V  SR V +  ++S  E  +     +QYD  I+PGG  G+ +LS +  V  ++K+
Sbjct: 44  VKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTLSTTPFVQQVVKE 98


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 26  SRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSD 130
           +R++ L+  +S T  L++K  Y+A  LPG  EG D
Sbjct: 307 ARELRLI--QSRTALLSKKSIYEAEFLPGFEEGED 339


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +2

Query: 44  VPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
           VPD+ + EAL    +   V     L G+D ++   KV +L  D ED
Sbjct: 80  VPDR-VPEALVSTSKKHLVAARDALRGNDDIALLHKVPSLDTDPED 124


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/54 (25%), Positives = 21/54 (38%)
 Frame = -3

Query: 180 SSWSLSRAPTFSDLERLSDPSKPPGRITASYCCFSARASVSDLSGTRVTCLEHS 19
           SSWSLS + +    + LSD       +      F    S++  S +      HS
Sbjct: 68  SSWSLSSSDSIMSYDSLSDDVSVLSFLDCPLTTFETAPSIASFSNSAADVSSHS 121


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 183 LSSWSLSRAPTFSDLERLSDPSKPPGRITASY 88
           L SW+  RA   +  + L  PSKP  R+ ASY
Sbjct: 400 LLSWAAIRAGGLA--KELFGPSKPTARVPASY 429


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 293 ADSLSLVLGYDVTAGPSPRRGLQTLWEQ-HKWQ 198
           A++ +L+L YDV   P P+  L  L E+ H W+
Sbjct: 451 AETEALLLEYDVQHRPFPKAVLDCLPEEGHNWK 483


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 251 RP*RHTPAPGTSCR 292
           +P  H PAPGT CR
Sbjct: 67  QPLDHEPAPGTKCR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,254,017
Number of Sequences: 5004
Number of extensions: 40293
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)