Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30139
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_1507| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_7223| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 683

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 26/51 (50%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 YTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKE-KADQVEKGMLI 450
           YTY E +RVV DGN++TSRGPGTA+ FG+ L+  + G +  AD +   ML+
Sbjct: 633 YTYSE-DRVVRDGNLITSRGPGTAFEFGIELVRAIRGDDGAADGLASQMLL 682



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +2

Query: 5   GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDN 184
           G  PV+CSRQV              +  YDAVILPGGL G+ +L+KS++VG +L++  + 
Sbjct: 577 GPDPVVCSRQV--------------QGPYDAVILPGGLTGAQNLAKSDQVGQILREQYEA 622

Query: 185 GK 190
           G+
Sbjct: 623 GR 624


>SB_35785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 232 PRRGEGPAVTSYPSTRDKLSAGDYTYVEGERVVVDGN 342
           P     PA+TSY   RD+LS  D   + G RV++  N
Sbjct: 682 PTDDTDPALTSYRKRRDELSVQDGCILWGARVIIPPN 718


>SB_21874| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 23/86 (26%), Positives = 30/86 (34%)
 Frame = -3

Query: 282 VPGAGV*RHGRPLATPWXXXXXXXXXXXXMIFPLSSWSLSRAPTFSDLERLSDPSKPPGR 103
           + G    +H  P   P+             I   ++ S SR PT  DL     PSK PG 
Sbjct: 92  IGGHNTLKHHSPSMAPFSCEPITSSASGNGIPVATNASTSRLPTVRDLYGAPTPSKKPGP 151

Query: 102 ITASYCCFSARASVSDLSGTRVTCLE 25
            TA       R +     G  + C E
Sbjct: 152 -TAEPSAKGMRINCDGWEGMPINCDE 176


>SB_1507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 235 RRGEGPAVTSYPSTRDKLSAGDYTYVEGERVVV 333
           R+G    VT Y S RD+L+  D    +GERV+V
Sbjct: 66  RQGLPTQVTPYFSFRDELTLHDGLIFKGERVIV 98


>SB_7223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 272 LGYDVTAGPSPRRGLQTLWEQHK 204
           +G  VT GP+ R G Q LW Q K
Sbjct: 30  VGLPVTMGPTERWGYQGLWVQRK 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,921,321
Number of Sequences: 59808
Number of extensions: 306394
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)