Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30139
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D61380-1|BAA09603.2| 189|Homo sapiens DJ-1 protein protein. 67 4e-11
BC008188-1|AAH08188.1| 189|Homo sapiens Parkinson disease (auto... 67 4e-11
AL034417-1|CAB52550.1| 189|Homo sapiens Parkinson disease (auto... 67 4e-11
AF021819-1|AAC12806.1| 189|Homo sapiens RNA-binding protein reg... 67 4e-11
AB073864-1|BAB71782.1| 189|Homo sapiens DJ-1 protein. 67 6e-11
AY648999-1|AAT68961.1| 52|Homo sapiens DJ-1 protein. 51 3e-06
>D61380-1|BAA09603.2| 189|Homo sapiens DJ-1 protein protein.
Length = 189
Score = 67.3 bits (157), Expect = 4e-11
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 241 GEGPAVTSYPSTRDKL-SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKE 417
G G VT++P +DK+ + G YTY E RV DG ++TSRGPGT++ F LA++E L GKE
Sbjct: 118 GFGSKVTTHPLAKDKMMNGGHYTYSEN-RVEKDGLILTSRGPGTSFEFALAIVEALNGKE 176
Query: 418 KADQVEKGMLI 450
A QV+ +++
Sbjct: 177 VAAQVKAPLVL 187
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 5 GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
G PV CSR V + PD SL +A E YD V+LPGG G+ +LS+S V +LK+ E+
Sbjct: 40 GKDPVQCSRDVVICPDASLEDAKKEGP-YDVVVLPGGNLGAQNLSESAAVKEILKEQEN 97
>BC008188-1|AAH08188.1| 189|Homo sapiens Parkinson disease
(autosomal recessive, early onset) 7 protein.
Length = 189
Score = 67.3 bits (157), Expect = 4e-11
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 241 GEGPAVTSYPSTRDKL-SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKE 417
G G VT++P +DK+ + G YTY E RV DG ++TSRGPGT++ F LA++E L GKE
Sbjct: 118 GFGSKVTTHPLAKDKMMNGGHYTYSEN-RVEKDGLILTSRGPGTSFEFALAIVEALNGKE 176
Query: 418 KADQVEKGMLI 450
A QV+ +++
Sbjct: 177 VAAQVKAPLVL 187
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 5 GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
G PV CSR V + PD SL +A E YD V+LPGG G+ +LS+S V +LK+ E+
Sbjct: 40 GKDPVQCSRDVVICPDASLEDAKKEGP-YDVVVLPGGNLGAQNLSESAAVKEILKEQEN 97
>AL034417-1|CAB52550.1| 189|Homo sapiens Parkinson disease
(autosomal recessive, early onset) 7 protein.
Length = 189
Score = 67.3 bits (157), Expect = 4e-11
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 241 GEGPAVTSYPSTRDKL-SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKE 417
G G VT++P +DK+ + G YTY E RV DG ++TSRGPGT++ F LA++E L GKE
Sbjct: 118 GFGSKVTTHPLAKDKMMNGGHYTYSEN-RVEKDGLILTSRGPGTSFEFALAIVEALNGKE 176
Query: 418 KADQVEKGMLI 450
A QV+ +++
Sbjct: 177 VAAQVKAPLVL 187
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 5 GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
G PV CSR V + PD SL +A E YD V+LPGG G+ +LS+S V +LK+ E+
Sbjct: 40 GKDPVQCSRDVVICPDASLEDAKKEGP-YDVVVLPGGNLGAQNLSESAAVKEILKEQEN 97
>AF021819-1|AAC12806.1| 189|Homo sapiens RNA-binding protein
regulatory subunit protein.
Length = 189
Score = 67.3 bits (157), Expect = 4e-11
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 241 GEGPAVTSYPSTRDKL-SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKE 417
G G VT++P +DK+ + G YTY E RV DG ++TSRGPGT++ F LA++E L GKE
Sbjct: 118 GFGSKVTTHPLAKDKMMNGGHYTYSEN-RVEKDGLILTSRGPGTSFEFALAIVEALNGKE 176
Query: 418 KADQVEKGMLI 450
A QV+ +++
Sbjct: 177 VAAQVKAPLVL 187
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 5 GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
G PV CSR V + PD SL +A E YD V+LPGG G+ +LS+S V +LK+ E+
Sbjct: 40 GKDPVQCSRDVVICPDASLEDAKKEGP-YDVVVLPGGNLGAQNLSESAAVKEILKEQEN 97
>AB073864-1|BAB71782.1| 189|Homo sapiens DJ-1 protein.
Length = 189
Score = 66.9 bits (156), Expect = 6e-11
Identities = 34/71 (47%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Frame = +1
Query: 241 GEGPAVTSYPSTRDKL-SAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKE 417
G G VT++P +DK+ + G YTY E RV DG ++TSRGPGT++ F LA++E L GKE
Sbjct: 118 GCGSKVTTHPLAKDKMMNGGHYTYSEN-RVEKDGLILTSRGPGTSFEFALAIVEALNGKE 176
Query: 418 KADQVEKGMLI 450
A QV+ +++
Sbjct: 177 VAAQVKAPLVL 187
Score = 55.2 bits (127), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 5 GSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
G PV CSR V + PD SL +A E YD V+LPGG G+ +LS+S V +LK+ E+
Sbjct: 40 GKDPVQCSRDVVICPDASLEDAKKEGP-YDVVVLPGGNLGAQNLSESAAVKEILKEQEN 97
>AY648999-1|AAT68961.1| 52|Homo sapiens DJ-1 protein.
Length = 52
Score = 51.2 bits (117), Expect = 3e-06
Identities = 25/50 (50%), Positives = 35/50 (70%)
Frame = +1
Query: 301 YTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKEKADQVEKGMLI 450
YTY E RV D ++TSRGPGT++ F LA++E L GKE A QV+ +++
Sbjct: 2 YTYSEN-RVEKDSLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVL 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,049,984
Number of Sequences: 237096
Number of extensions: 1695384
Number of successful extensions: 2579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2574
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -