Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30139
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80836-12|AAB37889.1|  187|Caenorhabditis elegans Dj-1 (mammalia...    74   8e-14
AF016418-9|AAK18904.1|  186|Caenorhabditis elegans Hypothetical ...    58   5e-09
Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U80836-12|AAB37889.1|  187|Caenorhabditis elegans Dj-1 (mammalian
           transcriptionalregulator) related protein 1.1 protein.
          Length = 187

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 35/65 (53%), Positives = 47/65 (72%)
 Frame = +1

Query: 256 VTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKEKADQVE 435
           VTS+PS ++KL  G Y Y E +RVVV G ++TSRGPGTA+ F L ++ELL GK+KA  + 
Sbjct: 122 VTSHPSVKEKLEKGGYKYSE-DRVVVSGKIITSRGPGTAFEFALKIVELLEGKDKATSLI 180

Query: 436 KGMLI 450
             ML+
Sbjct: 181 APMLL 185



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 29/80 (36%), Positives = 42/80 (52%)
 Frame = +2

Query: 2   EGSSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHED 181
           +G+ PV C+R   +VPD  L +   EK  +D VILPGG  GS++L++S  V  +LK   +
Sbjct: 40  DGAEPVKCARGAHIVPDVKLEDVETEK--FDIVILPGGQPGSNTLAESLLVRDVLKSQVE 97

Query: 182 NGKXXXXXXXXXXXXXXHGV 241
           +G               HGV
Sbjct: 98  SGGLIGAICAAPIALLSHGV 117


>AF016418-9|AAK18904.1|  186|Caenorhabditis elegans Hypothetical
           protein C49G7.11 protein.
          Length = 186

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 25/67 (37%), Positives = 45/67 (67%)
 Frame = +1

Query: 256 VTSYPSTRDKLSAGDYTYVEGERVVVDGNVVTSRGPGTAYWFGLALIELLTGKEKADQVE 435
           VT + + +DK++ G Y Y++ + VV+   V+TS+GPGTA+ F L ++E L G EK + + 
Sbjct: 121 VTCHYTVKDKMTEGGYKYLD-DNVVISDRVITSKGPGTAFEFALKIVETLEGPEKTNSLL 179

Query: 436 KGMLISQ 456
           K + +++
Sbjct: 180 KPLCLAK 186



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = +2

Query: 8   SSPVLCSRQVTLVPDKSLTEALAEKQQYDAVILPGGLEGSDSLSKSEKVGALLKDHEDNG 187
           + PV C++   +VPD +L +   + + +D +I+PGG  G   L++   +G LLK    +G
Sbjct: 42  TEPVKCAKGARIVPDVALKD--VKNKTFDIIIIPGG-PGCSKLAECPVIGELLKTQVKSG 98

Query: 188 KXXXXXXXXXXXXXXHGVARGR 253
                          HG+   R
Sbjct: 99  GLIGAICAGPTVLLAHGIVAER 120


>Z78546-7|CAB01772.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 385 LALIELLTGKEKADQVEKGMLISQ 456
           L L+EL  GK++ D++ K M+ SQ
Sbjct: 288 LILVELWLGKKRQDRIHKDMMASQ 311


>AL023830-4|CAA19474.1|  375|Caenorhabditis elegans Hypothetical
           protein T21H8.4 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 385 LALIELLTGKEKADQVEKGMLISQ 456
           L L+EL  GK++ D++ K M+ SQ
Sbjct: 288 LILVELWLGKKRQDRIHKDMMASQ 311


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,511,768
Number of Sequences: 27780
Number of extensions: 234281
Number of successful extensions: 440
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)