Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30136
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 105 5e-24
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 103 2e-23
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.28
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 29 0.50
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 29 0.87
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 28 1.5
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 27 2.0
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 2.6
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 3.5
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 4.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 6.1
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 26 6.1
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 25 8.1
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 8.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 8.1
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 105 bits (253), Expect = 5e-24
Identities = 47/76 (61%), Positives = 57/76 (75%)
Frame = +2
Query: 20 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 199
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 200 MQVCVLGDQQHCDEAK 247
M +C+LGD D AK
Sbjct: 62 MSICILGDAHDLDRAK 77
Score = 80.6 bits (190), Expect = 2e-16
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +1
Query: 349 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLC 504
SE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLC
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLC 163
Score = 77.0 bits (181), Expect = 2e-15
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +3
Query: 510 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 662
VAVGHVDM ++LA N+ L+INFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 166 VAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNIGSLVIKSTMGKPYRLY 216
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 103 bits (248), Expect = 2e-23
Identities = 47/76 (61%), Positives = 58/76 (76%)
Frame = +2
Query: 20 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 199
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPN 61
Query: 200 MQVCVLGDQQHCDEAK 247
M +C+LGD D AK
Sbjct: 62 MAICILGDAHDLDRAK 77
Score = 81.0 bits (191), Expect = 2e-16
Identities = 38/52 (73%), Positives = 43/52 (82%)
Frame = +1
Query: 349 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLC 504
SE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLC
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLC 163
Score = 74.1 bits (174), Expect = 2e-14
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +3
Query: 510 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 662
VAVGHV+M+ ++L N+ L++NFLVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 166 VAVGHVEMSEEQLIANIMLAVNFLVSLLKKGWQNIGSLVVKSTMGKPHRLY 216
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.28
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +2
Query: 2 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 166
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.50
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = -1
Query: 584 HKEVDGKMHILSKLIRSHVHMANCYKRHNTFFIWNLMVPLTSSIFCV 444
++++D +L + VH+ +R NT F + L + ++ IFC+
Sbjct: 228 NEQLDSNFTLLDAYLEPLVHLHEYSRRSNTLFFFYLPIVMSILIFCL 274
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 28.7 bits (61), Expect = 0.87
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -3
Query: 306 LFVLIQFFQSLSIHTWHIKVLASSQCCWSPRTQTCIFGRGMYFSFTV 166
L V + Q +++ W + +L Q ++ QT G + SFT+
Sbjct: 159 LLVFVCATQDIAVDGWSLNMLNPEQLSYASTAQTVGLNTGFFLSFTI 205
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 510 VAVGHVDMTPDELAQNVHLSINFLVS-LLKKHWQNVRSLHMKST 638
+ GHV T ELA+NV + F+ ++ + + S+H+K++
Sbjct: 201 IKCGHVSNTSTELAENVESILQFVSKHIVPDGAKGIASIHLKTS 244
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 483 PNEEGVVSFVAVGHVDMTPDE-LAQNVHLSI-NFLVSLLKKHWQNVRSLHMKS 635
P+++G+ + + +T D+ L +N L+ +F V LLK +W + H ++
Sbjct: 171 PHDKGIAACIEKNLTPITWDKNLVENHKLADRDFAVGLLKNYWSQLHEFHSEN 223
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 500 CVFCSSWPCGHDS**ACSECASFHQLPCV 586
C C W C D C++C ++ + CV
Sbjct: 262 CKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 530 HDS**ACSECASFHQLPCVTAQETLAEC 613
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -1
Query: 242 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEALQSPKSYVSCP*RIEE 63
P H A LQE A AA+ L+ ++NA G +S D +AL P S +
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL--PHLDFSDSAVTNQ 373
Query: 62 RHSRTRRACH 33
HS+++ + H
Sbjct: 374 SHSQSQNSLH 383
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 545 LIRSHVHMANCYKRHNTFFIW 483
L+++H +CYKRH IW
Sbjct: 1108 LLQNHEFSESCYKRHFDRLIW 1128
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 465 DFINLLRHGLLVGEKTREFTSFVQTGTQQTGNLLDQ 358
D L RH L + + F + Q GT+ NL DQ
Sbjct: 424 DLFRLFRHSNLSTSREQIFQNLEQLGTRVIKNLTDQ 459
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 393 FEQSW*I-PWSSLPPGVHDAED**SQGNH*VPNEEGVV 503
F + W I P+ SLP G H +E PN+EG V
Sbjct: 36 FPKEWSILPFLSLPDGAHSSEKDFVYFTLPFPNDEGTV 73
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 11 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 109
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 53 VNAVLQSSKDKKRNFLETV 109
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,925,424
Number of Sequences: 5004
Number of extensions: 60742
Number of successful extensions: 172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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