Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30136
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 115 4e-26
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 88 5e-18
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 88 5e-18
Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical p... 29 2.5
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 3.3
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p... 29 4.3
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 115 bits (276), Expect = 4e-26
Identities = 51/75 (68%), Positives = 62/75 (82%)
Frame = +2
Query: 20 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 199
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 200 MQVCVLGDQQHCDEA 244
M+VCV GDQ H DEA
Sbjct: 62 MKVCVFGDQHHLDEA 76
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +1
Query: 349 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLC 504
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLC
Sbjct: 112 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLC 163
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +3
Query: 510 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 662
VAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 166 VAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +1
Query: 349 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLC 504
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLC
Sbjct: 82 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLC 133
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +3
Query: 510 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 662
VAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 136 VAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 186
Score = 74.5 bits (175), Expect = 7e-14
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 128 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEA 244
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEA 46
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 88.2 bits (209), Expect = 5e-18
Identities = 38/52 (73%), Positives = 46/52 (88%)
Frame = +1
Query: 349 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLC 504
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLC
Sbjct: 51 SESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLC 102
Score = 84.2 bits (199), Expect = 8e-17
Identities = 38/51 (74%), Positives = 45/51 (88%)
Frame = +3
Query: 510 VAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPPQRLY 662
VAVGHV +T +EL N+ LSINFLVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 105 VAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 155
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 200 MQVCVLGDQQHCDEA 244
M+VCV GDQ H DEA
Sbjct: 1 MKVCVFGDQHHLDEA 15
>Z77663-10|CAB01204.1| 543|Caenorhabditis elegans Hypothetical
protein F53F4.11 protein.
Length = 543
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 498 VVSFVAVGHVDMTPDELAQNVHLSINFLVSLLKKHWQNVRSLHMKSTMGPP 650
V S V VGH+ + +L +N+ + + S + N+RS+++ ++ G P
Sbjct: 361 VRSCVNVGHLGQSSADLKENIDTVLEKIASKCPGGFANIRSIYLGASDGKP 411
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 77 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 187
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
protein C56C10.12 protein.
Length = 1599
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 140 PQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLMCHVWML 274
P+ KRF T+ + +I K CVL +Q CD+ L+CH+ L
Sbjct: 407 PRLSKRFIDTL-VGWI---KELTCVLNMRQSCDDGIFLLCHLLRL 447
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,321
Number of Sequences: 27780
Number of extensions: 357476
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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