Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30131
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 140 1e-34
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 92 6e-20
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 85 7e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 85 1e-17
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 74 2e-14
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 60 4e-10
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 58 2e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 57 2e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 56 4e-09
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 4e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 51 1e-07
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 48 9e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 48 1e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 2e-06
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 47 3e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 3e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 6e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 1e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 8e-04
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 39 8e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 38 0.001
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 38 0.001
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 34 0.016
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.27
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 30 0.35
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.9
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 3.3
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 26 4.3
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 4.3
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 26 5.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.6
SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase Gpd3|... 25 7.6
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family... 25 10.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 10.0
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 140 bits (340), Expect = 1e-34
Identities = 62/86 (72%), Positives = 76/86 (88%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R TYLVLDEADRMLDMGFEPQIRKI++QIRPDRQT+M+SATWPKEV++LA DYL DYIQ+
Sbjct: 269 RVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQV 328
Query: 182 NIGSLQLSANHNILQIVDICQEHEKK 259
+GSL L+A+HNI QIV++ +K+
Sbjct: 329 TVGSLDLAASHNIKQIVEVVDNADKR 354
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/65 (56%), Positives = 52/65 (80%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
K +IF TKR A++I+R +R+ GWPA+ +HGDK Q ERD VL +F+ G++ I+VATDVA+
Sbjct: 371 KVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVAS 430
Query: 493 RGLDV 507
RG+DV
Sbjct: 431 RGIDV 435
Score = 47.6 bits (108), Expect = 2e-06
Identities = 17/27 (62%), Positives = 24/27 (88%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRS 590
GI +V N+D+P ++EDY+HRIGRTGR+
Sbjct: 437 GITHVFNYDFPGNTEDYVHRIGRTGRA 463
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 599 KGHPYAFFTPSNSRQAKDLVSVLQE 673
KG Y +FT N++QA++LVS+L E
Sbjct: 466 KGTAYTYFTSDNAKQARELVSILSE 490
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 92.3 bits (219), Expect = 6e-20
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
RCTYLVLDEADRM D+GFEPQ+ +II IRPDRQT+++SAT+P+ ++ LA L ++I
Sbjct: 568 RCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEI 627
Query: 182 NIGSLQLSANHNILQIVDICQEHEK 256
+G + A+ + QIV++ E K
Sbjct: 628 TVGGRSVVAS-EVEQIVEVRPEESK 651
Score = 61.3 bits (142), Expect = 1e-10
Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 KENKLNVLLQEIGQ--SQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQER 426
+E+K + LL+ +G+ + + +T++FV+ + A+ + ++ + G+ + +HG K Q +R
Sbjct: 648 EESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDR 707
Query: 427 DEVLYQFKEGRASILVATDVAARGLDV 507
D + +K G +L+AT V ARGLDV
Sbjct: 708 DSTISDYKAGVFDVLIATSVVARGLDV 734
Score = 43.6 bits (98), Expect = 3e-05
Identities = 15/26 (57%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
++ V+N+D PN EDY+HR+GRTGR+
Sbjct: 737 LQLVVNYDCPNHMEDYVHRVGRTGRA 762
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 85.4 bits (202), Expect = 7e-18
Identities = 47/89 (52%), Positives = 59/89 (66%), Gaps = 6/89 (6%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPD------RQTLMWSATWPKEVKKLAEDYLGDY 172
YLVLDEADRMLD GFE IR II PD RQT+ +SATWP+ V+ LA +L D
Sbjct: 312 YLVLDEADRMLDTGFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPESVRALAATFLKDP 370
Query: 173 IQINIGSLQLSANHNILQIVDICQEHEKK 259
++I IGS +L+A+ NI QIV+I + K
Sbjct: 371 VKITIGSDELAASQNITQIVEILDDPRSK 399
Score = 63.3 bits (147), Expect = 3e-11
Identities = 42/125 (33%), Positives = 61/125 (48%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
KE L+ LL++ S K +IFV K++A + + R + V +HGD +Q R +
Sbjct: 399 KERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQ 457
Query: 433 VLYQFKEGRASILVATDVAARGLDVVVSNMXXXXXXXXXXXXTSIVLGELDVPKSKGTSI 612
L FK G+ +LVATDVAARGLD+ + +G +KGT+I
Sbjct: 458 ALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAI 517
Query: 613 CFLYP 627
F P
Sbjct: 518 TFFTP 522
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 593 NPKGHPYAFFTPSNSRQAKDLVSVLQE 673
N KG FFTP + A +LV+VL++
Sbjct: 511 NTKGTAITFFTPQDKSHAGELVNVLRQ 537
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 84.6 bits (200), Expect = 1e-17
Identities = 44/87 (50%), Positives = 63/87 (72%), Gaps = 4/87 (4%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIR----PDRQTLMWSATWPKEVKKLAEDYLGDYIQ 178
+LVLDEADRMLDMGFEPQIR I+E +RQTLM+SAT+P++++ LA D+L DY+
Sbjct: 332 FLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVF 391
Query: 179 INIGSLQLSANHNILQIVDICQEHEKK 259
+++G + S + NI Q V ++ EK+
Sbjct: 392 LSVGRVG-STSENITQKVVHVEDSEKR 417
Score = 77.4 bits (182), Expect = 2e-15
Identities = 43/117 (36%), Positives = 65/117 (55%)
Frame = +1
Query: 157 LLGRLHSDQYRIITTFRKSQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVET 336
LL R Y ++ R S N ++++ L +I + P T+IFVET
Sbjct: 380 LLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVET 439
Query: 337 KRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
KR A+ ++ + +PA +HGD+TQ+ER+ L F+ GR SI+VAT VA+RGLD+
Sbjct: 440 KRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDI 496
Score = 41.9 bits (94), Expect = 8e-05
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +VIN+D P +DY+HRIGRTGR+
Sbjct: 499 VTHVINYDLPTDIDDYVHRIGRTGRA 524
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 602 GHPYAFFTPSNSRQAKDLVSVLQE 673
G AFF +N AK+L+ +LQE
Sbjct: 528 GQAVAFFNRNNKGIAKELIELLQE 551
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 73.7 bits (173), Expect = 2e-14
Identities = 39/117 (33%), Positives = 60/117 (51%)
Frame = +1
Query: 277 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 456
++EI +S IIFV KR E I++ + GW AV +HG K+Q++R+ + Q +
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 457 RASILVATDVAARGLDVVVSNMXXXXXXXXXXXXTSIVLGELDVPKSKGTSICFLYP 627
A ILVATD+A RG+D+ ++ + +G GT+I FL P
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGP 622
Score = 60.1 bits (139), Expect = 3e-10
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 19/105 (18%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPD-------------------RQTLMWSAT 124
+CTY+V+DEADRMLDMGFE + KI+ + RQT+M+SAT
Sbjct: 399 QCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSAT 458
Query: 125 WPKEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEKK 259
P V LA+ YL + + + IG++ A + Q V++ + KK
Sbjct: 459 LPPRVANLAKSYLIEPVMLTIGNIG-QAVDRVEQRVEMISDDSKK 502
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 59.7 bits (138), Expect = 4e-10
Identities = 22/65 (33%), Positives = 42/65 (64%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+ +IF ++RK + ++ +R + MHG+ Q+ERD ++ F++G + +L+ TD+ A
Sbjct: 262 QAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWA 321
Query: 493 RGLDV 507
RG+DV
Sbjct: 322 RGIDV 326
Score = 44.0 bits (99), Expect = 2e-05
Identities = 20/56 (35%), Positives = 35/56 (62%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++ + + ++I
Sbjct: 167 LILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D P + E+YIHRIGR+GR
Sbjct: 329 VSLVINYDLPANRENYIHRIGRSGR 353
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 57.6 bits (133), Expect = 2e-09
Identities = 23/65 (35%), Positives = 41/65 (63%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+ +IF T+RK + ++ + + MHGD Q +RD ++++F+ G + IL+ TD+ A
Sbjct: 260 QAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLA 319
Query: 493 RGLDV 507
RG+DV
Sbjct: 320 RGIDV 324
Score = 49.2 bits (112), Expect = 5e-07
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGSL 196
VLDEAD ML GF+ QI I + + P Q ++ SAT P++V ++ ++ D I+I +
Sbjct: 166 VLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKD 225
Query: 197 QLSANHNILQIVDICQEHEKKIN 265
+L+ I Q ++ E K++
Sbjct: 226 ELTL-EGIKQFYVAVEKEEWKLD 247
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D P + E+YIHRIGR GR
Sbjct: 327 VSLVINYDLPANRENYIHRIGRGGR 351
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +1
Query: 307 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDV 486
G IIF T + ++ +R G+ A+ +HG +Q R L +FK G S LVATDV
Sbjct: 285 GNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDV 344
Query: 487 AARGLDV 507
AARGLD+
Sbjct: 345 AARGLDI 351
Score = 56.0 bits (129), Expect = 5e-09
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 190
YL++DEADR+LDM F P I KI++ I +R+TL++SAT +V+KL L +++ +
Sbjct: 192 YLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVS 251
Query: 191 S 193
S
Sbjct: 252 S 252
Score = 37.1 bits (82), Expect = 0.002
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ VIN+D P S+ YIHR+GRT R+
Sbjct: 354 VDVVINYDIPTDSKAYIHRVGRTARA 379
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 56.4 bits (130), Expect = 4e-09
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
K K+N LL + +Q +IFV++ +A + R +R +P++C+HG Q+ER +
Sbjct: 282 KNRKINDLLDSLEFNQ-----VVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIK 336
Query: 433 VLYQFKEGRASILVATDVAARGLDV 507
FK+ I VATDV RG+D+
Sbjct: 337 RYKAFKDFDKRICVATDVFGRGIDI 361
Score = 37.9 bits (84), Expect = 0.001
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D P+S + Y+HR+GR GR
Sbjct: 364 VNIVINYDMPDSPDSYLHRVGRAGR 388
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.4 bits (130), Expect = 4e-09
Identities = 32/96 (33%), Positives = 53/96 (55%)
Frame = +1
Query: 235 YLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKT 414
Y+ +E+K NVL++ G ++IIF + K AE I+R + G C+ G+
Sbjct: 330 YMDCQSEEHKYNVLVELYGLLTI--GQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLE 387
Query: 415 QQERDEVLYQFKEGRASILVATDVAARGLDVVVSNM 522
+RD ++ F+ G + +LV T+V ARG+DV N+
Sbjct: 388 GAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNL 423
Score = 46.0 bits (104), Expect = 5e-06
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 17 VLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
VLDEAD MLD G Q +I + + Q +++SAT+ + V+K AE + + +I + +
Sbjct: 259 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKT 318
Query: 194 LQLSANHNILQIVDICQEHEKKIN 265
+LS I Q+ CQ E K N
Sbjct: 319 EELSV-EGIKQLYMDCQSEEHKYN 341
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Frame = +3
Query: 513 IKYVINFDYPNSS------EDYIHRIGRTGR 587
+ V+N+D P + Y+HRIGRTGR
Sbjct: 421 VNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR 451
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
Y+V DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ + A+ L D + + +
Sbjct: 216 YVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL 274
Score = 49.6 bits (113), Expect = 4e-07
Identities = 26/85 (30%), Positives = 45/85 (52%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
K+ K + L G T++FV TK E +S + + G+ ++G Q+ R
Sbjct: 328 KKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLN 387
Query: 433 VLYQFKEGRASILVATDVAARGLDV 507
+ F+ G+ ++LV TDVA+RG+D+
Sbjct: 388 EINNFRLGKTNLLVVTDVASRGIDI 412
Score = 33.1 bits (72), Expect = 0.038
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGRS 590
VIN+D+P + ++HR+GRT R+
Sbjct: 418 VINYDFPPQPKVFVHRVGRTARA 440
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 51.2 bits (117), Expect = 1e-07
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 151
L+LDEADR+LDMGF + I+ + RQT+++SAT K VK LA
Sbjct: 189 LILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLA 234
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRY--GWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDV 486
KTI+F+ + ++ + RR G + +HG + Q R EV +F R +L TD+
Sbjct: 285 KTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDI 344
Query: 487 AARGLD 504
ARGLD
Sbjct: 345 VARGLD 350
Score = 34.3 bits (75), Expect = 0.016
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSKIQRDIHMLSLP 626
+ +VI D P + YIHR+GRT R + +L LP
Sbjct: 354 VDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLP 391
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 48.4 bits (110), Expect = 9e-07
Identities = 28/63 (44%), Positives = 36/63 (57%)
Frame = +1
Query: 319 IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARG 498
IIFV R AE I +R +H + Q+ER L +F+ A ILVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 499 LDV 507
LD+
Sbjct: 322 LDI 324
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
++ VINFD P +DYIHR+GRT R+
Sbjct: 327 VQLVINFDLPRDPDDYIHRVGRTARA 352
Score = 33.5 bits (73), Expect = 0.029
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQI--RPDRQTLMWSATWPKEVKKL 148
R +LV+DEADR+L F + + DRQTL+++AT +++L
Sbjct: 153 RIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQL 203
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
+V+DEADRML+ GF ++ +II+ RQT+++SAT +V L L +++ + +
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDN 468
Query: 194 LQLSANHNILQIVDICQEHE--KKIN*MYYCKKL 289
+ +A + V + + E + +Y CK+L
Sbjct: 469 KKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKEL 502
Score = 47.2 bits (107), Expect = 2e-06
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+TIIF +K A + A +HG +Q++R L F++G+ + L+ATDVA+
Sbjct: 506 RTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVAS 565
Query: 493 RGLDV 507
RG+D+
Sbjct: 566 RGIDI 570
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRS 590
GI+ VIN++ P + E Y+HR+GRT R+
Sbjct: 572 GIEVVINYEAPATHEVYLHRVGRTARA 598
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.0 bits (109), Expect = 1e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
CT V+DEAD++L F P I +++ +RQ ++SAT+P VK + +L +IN
Sbjct: 187 CTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEIN 246
Query: 185 I 187
+
Sbjct: 247 L 247
Score = 41.5 bits (93), Expect = 1e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD+P ++E Y+HRIGR+GR
Sbjct: 350 VNVVINFDFPKNAETYLHRIGRSGR 374
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 47.6 bits (108), Expect = 2e-06
Identities = 29/109 (26%), Positives = 56/109 (51%)
Frame = +1
Query: 178 DQYRIITTFRKSQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENI 357
D RII + + S + L + V+L+++ + E + +IFV+ +A+ +
Sbjct: 245 DPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNGELKPRVVIFVQDIERAKAL 304
Query: 358 SRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 504
+ +HG+ Q +R+E L +F++G +L+ATD+ ARG+D
Sbjct: 305 YTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGID 353
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/27 (70%), Positives = 22/27 (81%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRS 590
G+K VINFD+P S YIHRIGRTGR+
Sbjct: 356 GVKMVINFDFPQSVHSYIHRIGRTGRA 382
Score = 34.7 bits (76), Expect = 0.012
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+ V+DEADR+ + GF Q I+ ++SAT P V++LA+ D I+I +
Sbjct: 192 FFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIV 251
Query: 188 G 190
G
Sbjct: 252 G 252
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 46.8 bits (106), Expect = 3e-06
Identities = 23/47 (48%), Positives = 38/47 (80%), Gaps = 1/47 (2%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPKEVKKLA 151
LV+DEADR+L++GFE ++R+I++ + +RQTL++SAT +V+ LA
Sbjct: 240 LVIDEADRILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLA 286
Score = 45.2 bits (102), Expect = 9e-06
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
K I+F+ + + ++ + P + +HG + QQ R ++F IL+ T+VAA
Sbjct: 338 KVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAA 397
Query: 493 RGLDV 507
RGLD+
Sbjct: 398 RGLDI 402
Score = 35.1 bits (77), Expect = 0.009
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ +++ +D P+ DYIHR+GRT R
Sbjct: 405 VDWIVQYDPPDDPRDYIHRVGRTAR 429
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 304 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATD 483
PG KT++F + I+ + P+ +H Q++R + L +FK +LV TD
Sbjct: 389 PG-KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTD 447
Query: 484 VAARGLDV 507
VAARG+D+
Sbjct: 448 VAARGIDI 455
Score = 32.3 bits (70), Expect = 0.066
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSKIQRDIHMLSLPLQIPVKPKIWYLFYKK 674
+ +VI++ P++++ Y+HR GRT R+ ++ P ++ ++ Y KK
Sbjct: 458 VTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKK 511
Score = 31.9 bits (69), Expect = 0.087
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIE----QIRPDRQTLMWSATWPKEVKK 145
LVLDEADR+L ++ K++E + RQT ++SAT+ + +++
Sbjct: 272 LVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQ 319
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 124
L+LDEAD ++DMGF+ ++ II Q+ R+T ++SAT
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSAT 194
Score = 38.7 bits (86), Expect = 8e-04
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWP--AVCMHGDKTQQERDEVLYQFKEG-RASILVATD 483
K I+F + E + Y P V +HG + Q R +FK+ + ++L TD
Sbjct: 258 KAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTD 317
Query: 484 VAARGLDV 507
+A+RGLD+
Sbjct: 318 IASRGLDI 325
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +V+ D P + + HR GR GR+
Sbjct: 328 VDFVLQLDPPLDPKSFSHRCGRAGRA 353
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.5 bits (93), Expect = 1e-04
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWPKEVKKLAEDYLG-DYIQIN 184
+LDEADR++DMGF I I E + + + L +SAT P +V + LG D+ IN
Sbjct: 193 ILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 274 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY-GWPAVCMHGDKTQQERDEVLYQFK 450
LLQ++ S P ++ I+F+ T + + + + P +H T +R + F+
Sbjct: 282 LLQQL-TSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSITESFR 340
Query: 451 EGRASILVATDVAARGLD 504
+ ++ IL ATDV ARG+D
Sbjct: 341 KCQSGILFATDVVARGMD 358
Score = 39.1 bits (87), Expect = 6e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSKIQRDIHMLSLPLQIPVKPKIWYLFYKK 674
I V+ P++++DYIHRIGRTGR+ + +++ L + P I +L K+
Sbjct: 362 ITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIKHLPLKR 415
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 38.7 bits (86), Expect = 8e-04
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 13/70 (18%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIR------------PDRQ-TLMWSATWPKEVKKLA 151
++VLDE DR++DMGFE + KI+ + P R+ T++ SAT VK+L+
Sbjct: 297 WVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLS 356
Query: 152 EDYLGDYIQI 181
+ L D + +
Sbjct: 357 DSALKDALYL 366
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSKIQRDIHMLSLP 626
+ V+ +D P S++DY+HRIGRT R+ M LP
Sbjct: 515 VDLVVQYDAPFSTDDYLHRIGRTARAGHNGAAIMFLLP 552
Score = 33.5 bits (73), Expect = 0.029
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRAS---ILVATDVAARGLDV 507
+HG +QQ R L F S IL+ TDVAARGLD+
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDL 512
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 38.7 bits (86), Expect = 8e-04
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Frame = +1
Query: 247 T*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMH-----GDK 411
T K KL LL+ + + +T+IFVE K A +S ++ P + H G
Sbjct: 342 TDKVFKLLELLKATYRKSD-SVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPS 400
Query: 412 TQQE-------RDEVLYQFKEGRASILVATDVAARGLDVVVSNM 522
Q E + + L++FK G+ ++L+AT VA G+DV N+
Sbjct: 401 DQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNL 444
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/23 (60%), Positives = 20/23 (86%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGRS 590
V+NFD P++++ YIHRIGRT R+
Sbjct: 398 VLNFDMPSNTKSYIHRIGRTARA 420
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 190
+LV+DEAD ML G+ ++ + + Q+ + SAT K + L + + + +
Sbjct: 167 FLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVK 226
Query: 191 SLQLSANHNILQIVDICQEHEKKIN*MYYCKKLDKVKNLV 310
+ A+ + Q V C E +K + Y KL +K +
Sbjct: 227 DKE--ASGKLTQYVVKCSEQDKFLL-AYILLKLRLIKGKI 263
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Frame = +1
Query: 256 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY----------GWPAVCMHG 405
E+ ++ + + Q + +IFVE + AE I R + ++ G AV
Sbjct: 415 EHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAA 474
Query: 406 DKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
+Q+ ++E + QF++G + L+AT + GLD+
Sbjct: 475 GMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDI 508
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 34.3 bits (75), Expect = 0.016
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGRS 590
VIN+D P S Y+HRIGRT R+
Sbjct: 509 VINYDPPLSVRSYVHRIGRTARA 531
Score = 31.5 bits (68), Expect = 0.12
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +1
Query: 412 TQQERDEVLYQFKEGRASILVATDVAARGLDV 507
++ ER +++ +F G ++LV +D+ ARG+DV
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDV 503
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQI 88
Y+V+DEADR+LD F+ + ++ +I
Sbjct: 288 YMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.3 bits (65), Expect = 0.27
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 319 IIFVETKRKAENISRNIRR-YGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAAR 495
II+ ++ E ++ +R YG A H + ER + +++ G I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 496 GLD 504
G+D
Sbjct: 806 GVD 808
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.9 bits (64), Expect = 0.35
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 415 QQERDEVLYQFKEGRASILVATDVAARGLDVVVSNM 522
Q ++ E + QF+ G + LVAT + GLD+ ++M
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDM 552
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 EPGAKTIIFVETKRKAENISRNIRR---YGWPAVCMH-GDKTQQERDEVLYQFK--EGRA 462
E + IIF TK+ E I R + + + V ++ GD + +ER F+ G+
Sbjct: 1413 EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKT 1472
Query: 463 SILVATDVAARGLD 504
I++AT G++
Sbjct: 1473 RIMIATKAFGLGIN 1486
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 301 EPGAKTIIFVETKRKAENISRNIRR---YGWPAVCMH-GDKTQQERDEVLYQFK--EGRA 462
E + IIF TK+ E I R + + + V ++ GD + +ER F+ G+
Sbjct: 1413 EGDGRAIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKT 1472
Query: 463 SILVATDVAARGLD 504
I++AT G++
Sbjct: 1473 RIMIATKAFGLGIN 1486
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 588 NVQFSQYDGCNPPTNLDNQNLLHI*YHNIKPSSCNISCYKNTSTTFLELIQNFISF 421
N++F D PP N+ LHI +HN S C I+ T +L+ F +F
Sbjct: 575 NLRFRVLD-TYPPNNVIYLFSLHIIFHNELESLCGITQSSFIPTIMRQLLDWFKNF 629
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 328 QKLLFSHQVLDFVQFLAIIHLIYFLFMFLTNI 233
+ +LF + L FVQFL I ++ FM+ NI
Sbjct: 235 RSILFRSEGLSFVQFLVCI-AVFATFMYTLNI 265
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = -1
Query: 504 IKPSSCNISCYKNTSTTFLELIQNFISFLLSFIAMHTNSWPAIS-PDVP 361
+ PSS S N+ ++ + I+N+IS +L +T+S AI P +P
Sbjct: 252 VLPSSITSSAKSNSRSSLSQKIRNYISNMLFDAISYTDSCLAIHLPFIP 300
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 77 IEQIRPDRQTLMWSATWPKEVKKLAED 157
I + R +R TL S +P+E K L+ED
Sbjct: 268 IRKKRSERDTLNVSTEFPEETKDLSED 294
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = -1
Query: 486 NISCYKNTSTTFLELIQNFISFLLSFIAMHTNSWPAISPDV 364
N+S +K ++ + L+ F FL+ + ++N +S DV
Sbjct: 2302 NVSSFKGSTPSLWNLLNQFSKFLIEIASANSNIVYKLSYDV 2342
>SPBC354.12 |gpd3||glyceraldehyde 3-phosphate dehydrogenase
Gpd3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 349 QLFSWFQQKLLFSHQVLDFVQFLA 278
+L SW+ + +SH+V+D V + A
Sbjct: 309 KLVSWYDNEWGYSHRVVDLVAYTA 332
>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 234 IFVKNMKRK*IKCIIARNWTKSRTWCEN 317
IFV+ ++R + ++++ W K W EN
Sbjct: 335 IFVERLRRHTDREVVSQLWDKLERWMEN 362
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.0 bits (52), Expect = 10.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 578 NWTFQNPKGHPYAFFTPSNSRQAKDLVSV 664
N T + P + F PSNS KDL +V
Sbjct: 258 NNTSEKPDSNNCGFLLPSNSTSIKDLKNV 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,643
Number of Sequences: 5004
Number of extensions: 65771
Number of successful extensions: 294
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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