Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30131
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       76   4e-16
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.87 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.87 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   3.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 75.8 bits (178), Expect = 4e-16
 Identities = 41/99 (41%), Positives = 60/99 (60%)
 Frame = +1

Query: 211 SQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPA 390
           S    N   ++R  K++ L  +L+    S   G  T++FVE K+KA+ I+  +    +P 
Sbjct: 420 SDVEQNFYEVARNKKKDLLKEILERENDSGTLGG-TLVFVEMKKKADFIAVFLSENNYPT 478

Query: 391 VCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
             +HGD+ Q++R+E L  FK GR SILVAT VAARGLD+
Sbjct: 479 TSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDI 517



 Score = 67.7 bits (158), Expect = 9e-14
 Identities = 35/64 (54%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
 Frame = +2

Query: 11  YLVLDEADRMLDMGFEPQIRKII--EQIRP--DRQTLMWSATWPKEVKKLAEDYLGDYIQ 178
           +LVLDEADRMLDMGF P I K++  E + P  +RQTLM+SAT+P EV+ LA  +L +Y+ 
Sbjct: 350 FLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYLF 409

Query: 179 INIG 190
           + +G
Sbjct: 410 LAVG 413



 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = +3

Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
           + +VIN+D P   ++Y+HRIGRTGR
Sbjct: 520 VSHVINYDLPKGIDEYVHRIGRTGR 544


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 588 NVQFSQYDGCNPPTNLDNQNLLHI 517
           NV+ + + G  PP  L+N  ++H+
Sbjct: 226 NVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 588 NVQFSQYDGCNPPTNLDNQNLLHI 517
           NV+ + + G  PP  L+N  ++H+
Sbjct: 226 NVRIADHRGVMPPVILENSGVVHV 249


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 593 FGTSSSPNTMDVILRRIWIIKIYYIFDTTTSSPRAATSVA 474
           F T+S  N   + L R W I   + + +  S  RAA  +A
Sbjct: 129 FSTASILNLCVISLDRYWAITDPFTYPSKMSRRRAAVLIA 168


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 604 TSICFLYPFKF 636
           TS+CF+YP  F
Sbjct: 128 TSLCFVYPLDF 138


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 604 TSICFLYPFKF 636
           TS+CF+YP  F
Sbjct: 128 TSLCFVYPLDF 138


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 331 ETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
           E ++K+    R  R+YG  +     D+T++ER +
Sbjct: 277 EREQKSYKNEREYRKYGETSKERSRDRTERERSK 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,594
Number of Sequences: 438
Number of extensions: 4318
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)