Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30131
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 120 1e-27
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 120 1e-27
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 118 4e-27
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 107 7e-24
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 104 6e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 101 3e-22
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 101 3e-22
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 101 3e-22
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 100 1e-21
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 95 4e-20
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 91 8e-19
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 88 4e-18
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 86 2e-17
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 85 3e-17
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 85 3e-17
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 83 1e-16
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 71 9e-13
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 69 2e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 66 2e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 66 3e-11
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 66 3e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 65 5e-11
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 64 6e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 64 8e-11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 62 4e-10
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 59 2e-09
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 59 3e-09
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 59 3e-09
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 57 1e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 56 3e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 56 3e-08
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 55 4e-08
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 55 4e-08
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 55 4e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 55 5e-08
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 54 9e-08
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 54 1e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 53 2e-07
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 53 2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 53 2e-07
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 53 2e-07
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 53 2e-07
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 52 3e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 3e-07
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 52 4e-07
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 52 4e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 52 4e-07
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 1e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 49 2e-06
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 49 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 48 6e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 47 1e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 47 1e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 47 1e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 45 4e-05
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 40 0.002
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.002
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 39 0.003
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 38 0.005
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 38 0.005
At2g28600.1 68415.m03476 expressed protein 38 0.006
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.008
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 36 0.019
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.057
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 35 0.057
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 34 0.075
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 34 0.100
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 33 0.13
At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila... 33 0.17
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 32 0.40
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 32 0.40
At4g01800.1 68417.m00237 preprotein translocase secA subunit, pu... 31 0.53
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 31 0.70
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 29 2.1
At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase (A... 29 2.8
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 29 2.8
At4g03390.1 68417.m00461 leucine-rich repeat transmembrane prote... 29 3.8
At5g32169.1 68418.m03692 hypothetical protein 28 5.0
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 28 5.0
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 28 6.6
At1g74830.1 68414.m08670 expressed protein contains Pfam profile... 28 6.6
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put... 27 8.7
At1g74790.1 68414.m08665 expressed protein contains similarity t... 27 8.7
At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family pr... 27 8.7
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 120 bits (288), Expect = 1e-27
Identities = 56/85 (65%), Positives = 66/85 (77%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L D +
Sbjct: 312 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKA 371
Query: 182 NIGSLQLSANHNILQIVDICQEHEK 256
IGS L AN +I Q+++I EK
Sbjct: 372 IIGSTDLKANQSINQVIEIVPTPEK 396
Score = 98.3 bits (234), Expect = 4e-21
Identities = 54/112 (48%), Positives = 72/112 (64%), Gaps = 2/112 (1%)
Frame = +1
Query: 178 DQYRII--TTFRKSQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 351
D Y+ I +T K+ S N + + K N LL + Q + G+K +IFVETKR +
Sbjct: 367 DPYKAIIGSTDLKANQSIN-QVIEIVPTPEKYNRLLTLLKQLMD-GSKILIFVETKRGCD 424
Query: 352 NISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
++R +R GWPA+ +HGDKTQ ERD VL +FK GR+ I+ ATDVAARGLDV
Sbjct: 425 QVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDV 476
Score = 48.8 bits (111), Expect = 3e-06
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
IK V+N+D+PN+ EDYIHRIGRTGR+
Sbjct: 479 IKCVVNYDFPNTLEDYIHRIGRTGRA 504
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 599 KGHPYAFFTPSNSRQAKDLVSVLQE 673
KG + FFT N++ A++LV +LQE
Sbjct: 507 KGMAFTFFTHDNAKFARELVKILQE 531
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 120 bits (288), Expect = 1e-27
Identities = 56/85 (65%), Positives = 66/85 (77%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA +L D +
Sbjct: 312 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKA 371
Query: 182 NIGSLQLSANHNILQIVDICQEHEK 256
IGS L AN +I Q+++I EK
Sbjct: 372 IIGSTDLKANQSINQVIEIVPTPEK 396
Score = 94.3 bits (224), Expect = 7e-20
Identities = 52/110 (47%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = +1
Query: 178 DQYRII--TTFRKSQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAE 351
D Y+ I +T K+ S N + + K N LL + Q + G+K +IFVETKR +
Sbjct: 367 DPYKAIIGSTDLKANQSIN-QVIEIVPTPEKYNRLLTLLKQLMD-GSKILIFVETKRGCD 424
Query: 352 NISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGL 501
++R +R GWPA+ +HGDKTQ ERD VL +FK GR+ I+ ATDVAARGL
Sbjct: 425 QVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 118 bits (284), Expect = 4e-27
Identities = 55/85 (64%), Positives = 67/85 (78%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ +L + ++
Sbjct: 246 RVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKV 305
Query: 182 NIGSLQLSANHNILQIVDICQEHEK 256
IGS L AN I QIVD+ E +K
Sbjct: 306 IIGSSDLKANRAIRQIVDVISESQK 330
Score = 89.8 bits (213), Expect = 1e-18
Identities = 43/90 (47%), Positives = 65/90 (72%)
Frame = +1
Query: 238 LSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ 417
+S + K NKL LL++I G++ ++F++TK+ + I+R +R GWPA+ +HGDK+Q
Sbjct: 325 ISESQKYNKLVKLLEDIMD----GSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQ 380
Query: 418 QERDEVLYQFKEGRASILVATDVAARGLDV 507
ERD VL +F+ G++ I+ ATDVAARGLDV
Sbjct: 381 AERDWVLSEFRSGKSPIMTATDVAARGLDV 410
Score = 50.8 bits (116), Expect = 8e-07
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+KYVIN+D+P S EDY+HRIGRTGR+
Sbjct: 413 VKYVINYDFPGSLEDYVHRIGRTGRA 438
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +2
Query: 599 KGHPYAFFTPSNSRQAKDLVSVLQE 673
KG Y FFT +N+R AK+L ++LQE
Sbjct: 441 KGTAYTFFTVANARFAKELTNILQE 465
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 107 bits (257), Expect = 7e-24
Identities = 51/83 (61%), Positives = 67/83 (80%), Gaps = 1/83 (1%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
LVLDEADRMLDMGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A D L + +Q+NIG
Sbjct: 585 LVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGR 644
Query: 194 L-QLSANHNILQIVDICQEHEKK 259
+ +L+AN I Q V++ + EK+
Sbjct: 645 VDELAANKAITQYVEVVPQMEKE 667
Score = 88.2 bits (209), Expect = 4e-18
Identities = 42/77 (54%), Positives = 61/77 (79%)
Frame = +1
Query: 277 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 456
L++I +SQE G+K IIF TKR ++++R++ R+ + AV +HGDKTQ ERD VL QF+ G
Sbjct: 670 LEQILRSQERGSKVIIFCSTKRLCDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSG 728
Query: 457 RASILVATDVAARGLDV 507
++ +L+ATDVAARGLD+
Sbjct: 729 KSCVLIATDVAARGLDI 745
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
I+ VIN+D+P EDY+HRIGRTGR+
Sbjct: 748 IRVVINYDFPTGVEDYVHRIGRTGRA 773
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 104 bits (249), Expect = 6e-23
Identities = 49/84 (58%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Frame = +2
Query: 8 TYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+YLVLDEADRMLDMGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A D L + Q+NI
Sbjct: 377 SYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVNI 436
Query: 188 GSL-QLSANHNILQIVDICQEHEK 256
G++ +L AN +I Q +++ EK
Sbjct: 437 GNVDELVANKSITQTIEVLAPMEK 460
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/77 (58%), Positives = 59/77 (76%)
Frame = +1
Query: 277 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 456
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ERD+VL QF+ G
Sbjct: 464 LEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSG 522
Query: 457 RASILVATDVAARGLDV 507
R +LVATDVAARGLDV
Sbjct: 523 RTPVLVATDVAARGLDV 539
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
I+ V+N+D+PN EDY+HRIGRTGR+
Sbjct: 542 IRVVVNYDFPNGVEDYVHRIGRTGRA 567
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 3e-22
Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 TYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+NI
Sbjct: 306 SYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI 365
Query: 188 GSL-QLSANHNILQIVDICQEHEKK 259
G++ +L AN +I Q +++ EK+
Sbjct: 366 GNVDELVANKSITQHIEVVAPMEKQ 390
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +1
Query: 277 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 456
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ERD VL QF+ G
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 457 RASILVATDVAARGLDV 507
R +LVATDVAARGLDV
Sbjct: 452 RTPVLVATDVAARGLDV 468
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
I+ V+N+D+PN EDY+HRIGRTGR+
Sbjct: 471 IRAVVNYDFPNGVEDYVHRIGRTGRA 496
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 101 bits (243), Expect = 3e-22
Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 TYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+NI
Sbjct: 306 SYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI 365
Query: 188 GSL-QLSANHNILQIVDICQEHEKK 259
G++ +L AN +I Q +++ EK+
Sbjct: 366 GNVDELVANKSITQHIEVVAPMEKQ 390
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +1
Query: 277 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 456
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ERD VL QF+ G
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 457 RASILVATDVAARGLDV 507
R +LVATDVAARGLDV
Sbjct: 452 RTPVLVATDVAARGLDV 468
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
I+ V+N+D+PN EDY+HRIGRTGR+
Sbjct: 471 IRAVVNYDFPNGVEDYVHRIGRTGRA 496
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 101 bits (243), Expect = 3e-22
Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = +2
Query: 8 TYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+NI
Sbjct: 306 SYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI 365
Query: 188 GSL-QLSANHNILQIVDICQEHEKK 259
G++ +L AN +I Q +++ EK+
Sbjct: 366 GNVDELVANKSITQHIEVVAPMEKQ 390
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/77 (58%), Positives = 58/77 (75%)
Frame = +1
Query: 277 LQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEG 456
L++I +SQEPG+K IIF TKR + ++RN+ R + A +HGDK+Q ERD VL QF+ G
Sbjct: 393 LEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSG 451
Query: 457 RASILVATDVAARGLDV 507
R +LVATDVAARGLDV
Sbjct: 452 RTPVLVATDVAARGLDV 468
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
I+ V+N+D+PN EDY+HRIGRTGR+
Sbjct: 471 IRAVVNYDFPNGVEDYVHRIGRTGRA 496
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 100 bits (239), Expect = 1e-21
Identities = 46/87 (52%), Positives = 66/87 (75%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA + L D I++
Sbjct: 375 RASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRV 434
Query: 182 NIGSLQLSANHNILQIVDICQEHEKKI 262
+G + + AN +I Q+V++ +K+
Sbjct: 435 TVGEVGM-ANEDITQVVNVIPSDAEKL 460
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/82 (36%), Positives = 44/82 (53%)
Frame = +1
Query: 262 KLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLY 441
KL LL+++ + G ++F K + I + + +HGDK Q R E L
Sbjct: 459 KLPWLLEKLPGMIDEG-DVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQ 517
Query: 442 QFKEGRASILVATDVAARGLDV 507
+FK G +L+ATDVAARGLD+
Sbjct: 518 KFKSGVHHVLIATDVAARGLDI 539
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+K V+N+D + ++HRIGRTGR+
Sbjct: 542 LKTVVNYDIAKDMDMHVHRIGRTGRA 567
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 95.1 bits (226), Expect = 4e-20
Identities = 44/85 (51%), Positives = 63/85 (74%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R TYLV+DEADRM DMGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA L ++I
Sbjct: 546 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEI 605
Query: 182 NIGSLQLSANHNILQIVDICQEHEK 256
+G + N +I Q+V+I E E+
Sbjct: 606 QVGGRSV-VNKDITQLVEIRPESER 629
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
++ V+NFD PN EDY+HR+GRTGR+
Sbjct: 683 LELVVNFDAPNHYEDYVHRVGRTGRA 708
Score = 30.7 bits (66), Expect = 0.93
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +1
Query: 418 QERDEVLYQFKEGRASILVATDVAARGLDV 507
+ +++ + FK ++L+AT VAARGLDV
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDV 680
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 90.6 bits (215), Expect = 8e-19
Identities = 41/85 (48%), Positives = 63/85 (74%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
R T+LV+DEADRM DMGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA L ++I
Sbjct: 679 RVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEI 738
Query: 182 NIGSLQLSANHNILQIVDICQEHEK 256
+G + N +I Q+V++ E ++
Sbjct: 739 QVGGRSV-VNKDITQLVEVRPESDR 762
Score = 64.1 bits (149), Expect = 8e-11
Identities = 29/78 (37%), Positives = 51/78 (65%)
Frame = +1
Query: 274 LLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKE 453
LL+ +G+ E G K ++FV+++ K + + R++ + +P + +HG K Q +R+ + FK
Sbjct: 766 LLELLGEWSEKG-KILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKN 824
Query: 454 GRASILVATDVAARGLDV 507
++L+AT VAARGLDV
Sbjct: 825 DVCNLLIATSVAARGLDV 842
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
++ V+NFD PN EDY+HR+GRTGR+
Sbjct: 845 LELVVNFDAPNHYEDYVHRVGRTGRA 870
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 88.2 bits (209), Expect = 4e-18
Identities = 39/84 (46%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Frame = +2
Query: 8 TYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLG-DYIQIN 184
+++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +V KLA++++ + I++
Sbjct: 267 SFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVI 326
Query: 185 IGSLQLSANHNILQIVDICQEHEK 256
IGS+ L+ANH+++QI+++ E +
Sbjct: 327 IGSVDLAANHDVMQIIEVLDERAR 350
Score = 74.1 bits (174), Expect = 8e-14
Identities = 37/85 (43%), Positives = 56/85 (65%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
++ +L LL++ +SQ+ + ++F K +AE + R +++ GW AV +HG+K Q ER
Sbjct: 350 RDQRLIALLEKYHKSQKN--RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTR 407
Query: 433 VLYQFKEGRASILVATDVAARGLDV 507
L FKEG +LVATDVAARGLD+
Sbjct: 408 SLSLFKEGSCPLLVATDVAARGLDI 432
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSKIQRDIHMLSLPL 629
++ VIN+ +P ++EDY+HRIGRTGR+ + H PL
Sbjct: 435 VEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPL 473
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 85.8 bits (203), Expect = 2e-17
Identities = 44/87 (50%), Positives = 65/87 (74%), Gaps = 4/87 (4%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQ 178
+L LDEADRMLDMGFEPQIRKI+EQ+ R RQTL++SAT+P+E+++LA D+L +YI
Sbjct: 314 FLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIF 373
Query: 179 INIGSLQLSANHNILQIVDICQEHEKK 259
+ +G + S+ I+Q V+ + +K+
Sbjct: 374 LAVGRVG-SSTDLIVQRVEFVLDSDKR 399
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/66 (57%), Positives = 49/66 (74%)
Frame = +1
Query: 310 AKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVA 489
A T++FVETKR A+++ + G+PA +HGD+TQQER+ L FK GR ILVATDVA
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVA 478
Query: 490 ARGLDV 507
ARGLD+
Sbjct: 479 ARGLDI 484
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +V+NFD PN +DY+HRIGRTGR+
Sbjct: 487 VAHVVNFDLPNDIDDYVHRIGRTGRA 512
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/87 (49%), Positives = 64/87 (73%), Gaps = 4/87 (4%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQ 178
+L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D++ +YI
Sbjct: 306 FLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIF 365
Query: 179 INIGSLQLSANHNILQIVDICQEHEKK 259
+ +G + S+ I Q V+ QE +K+
Sbjct: 366 LAVGRVG-SSTDLITQRVEFVQESDKR 391
Score = 81.8 bits (193), Expect = 4e-16
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +1
Query: 235 YLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKT 414
++ + K + L LL ++Q+ + T++FVETKR A+ + + +PA +HGD+T
Sbjct: 384 FVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRT 443
Query: 415 QQERDEVLYQFKEGRASILVATDVAARGLDV 507
QQER+ L FK GR ILVATDVAARGLD+
Sbjct: 444 QQEREVALRSFKTGRTPILVATDVAARGLDI 474
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +V+NFD PN +DY+HRIGRTGR+
Sbjct: 477 VAHVVNFDLPNDIDDYVHRIGRTGRA 502
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 85.4 bits (202), Expect = 3e-17
Identities = 43/87 (49%), Positives = 64/87 (73%), Gaps = 4/87 (4%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYIQ 178
+L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D++ +YI
Sbjct: 306 FLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIF 365
Query: 179 INIGSLQLSANHNILQIVDICQEHEKK 259
+ +G + S+ I Q V+ QE +K+
Sbjct: 366 LAVGRVG-SSTDLITQRVEFVQESDKR 391
Score = 81.8 bits (193), Expect = 4e-16
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +1
Query: 235 YLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKT 414
++ + K + L LL ++Q+ + T++FVETKR A+ + + +PA +HGD+T
Sbjct: 384 FVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRT 443
Query: 415 QQERDEVLYQFKEGRASILVATDVAARGLDV 507
QQER+ L FK GR ILVATDVAARGLD+
Sbjct: 444 QQEREVALRSFKTGRTPILVATDVAARGLDI 474
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +V+NFD PN +DY+HRIGRTGR+
Sbjct: 477 VAHVVNFDLPNDIDDYVHRIGRTGRA 502
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 83.4 bits (197), Expect = 1e-16
Identities = 42/87 (48%), Positives = 65/87 (74%), Gaps = 4/87 (4%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQTLMWSATWPKEVKKLAEDYLGDYIQ 178
+L LDEADRMLDMGFEPQIRKI++Q+ P RQT+++SAT+P+E+++LA D+L +YI
Sbjct: 301 FLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIF 360
Query: 179 INIGSLQLSANHNILQIVDICQEHEKK 259
+ +G + S+ I+Q V+ + +K+
Sbjct: 361 LAVGRVG-SSTDLIVQRVEFVHDSDKR 386
Score = 77.8 bits (183), Expect = 6e-15
Identities = 37/71 (52%), Positives = 51/71 (71%)
Frame = +1
Query: 295 SQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILV 474
+Q A T++FVETK+ A+++ + G+PA +HGD++QQER+ L FK GR ILV
Sbjct: 401 NQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILV 460
Query: 475 ATDVAARGLDV 507
ATDVAARGLD+
Sbjct: 461 ATDVAARGLDI 471
Score = 45.2 bits (102), Expect = 4e-05
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +V+NFD PN +DY+HRIGRTGR+
Sbjct: 474 VAHVVNFDLPNDIDDYVHRIGRTGRA 499
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 70.5 bits (165), Expect = 9e-13
Identities = 32/84 (38%), Positives = 54/84 (64%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C YL LDEADR++D+GFE IR++ + + RQTL++SAT P +++ A L + +N
Sbjct: 303 CRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVN 362
Query: 185 IGSLQLSANHNILQIVDICQEHEK 256
+G +AN +++Q V+ ++ K
Sbjct: 363 VGRAG-AANLDVIQEVEYVKQEAK 385
Score = 59.3 bits (137), Expect = 2e-09
Identities = 31/84 (36%), Positives = 50/84 (59%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
+E K+ LL+ + ++ P +IF E K ++I + G AV +HG K Q++R+
Sbjct: 382 QEAKIVYLLECLQKTSPP---VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREY 438
Query: 433 VLYQFKEGRASILVATDVAARGLD 504
+ FK G+ +LVATDVA++GLD
Sbjct: 439 AISSFKAGKKDVLVATDVASKGLD 462
Score = 41.1 bits (92), Expect = 7e-04
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
I++VIN+D P E+Y+HRIGRTGR
Sbjct: 466 IQHVINYDMPAEIENYVHRIGRTGR 490
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 69.3 bits (162), Expect = 2e-12
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
++NK+ V+ +I + + G +TIIFV+TK A+ + + + G+ +HG+ T+ +RD+
Sbjct: 323 EQNKIEVIKDQIMELGDIG-QTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDK 381
Query: 433 VLYQFKEGRASILVATDVAARGLD 504
++ +FKE +L+ATDV ARG D
Sbjct: 382 IVKEFKECLTQVLIATDVIARGFD 405
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/84 (36%), Positives = 52/84 (61%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C L LDEADR++D+GFE IR + + + RQTL++SAT P +++ A L + +N
Sbjct: 254 CRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVN 313
Query: 185 IGSLQLSANHNILQIVDICQEHEK 256
+G +AN +++Q V+ ++ K
Sbjct: 314 VGRAG-AANLDVIQEVEYVKQEAK 336
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
+E K+ LL+ + ++ P +IF E K ++I + G AV +HG K Q++RD
Sbjct: 333 QEAKIVYLLECLQKTTPP---VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDY 389
Query: 433 VLYQFKEGRASILVATDVAARGLD 504
+ FK G+ +LVATDVA++GLD
Sbjct: 390 AISLFKAGKKDVLVATDVASKGLD 413
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
I++VIN+D P E+Y+HRIGRTGR
Sbjct: 417 IQHVINYDMPGEIENYVHRIGRTGR 441
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/67 (47%), Positives = 45/67 (67%)
Frame = +1
Query: 307 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDV 486
G K I+F +TKR A+ +S + R + +HGD +Q +R+ L F++G +ILVATDV
Sbjct: 349 GGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNILVATDV 407
Query: 487 AARGLDV 507
AARGLDV
Sbjct: 408 AARGLDV 414
Score = 54.0 bits (124), Expect = 9e-08
Identities = 22/59 (37%), Positives = 41/59 (69%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
++VLDEAD+ML +GF + I+E++ RQ++M+SAT P ++ L + YL + + +++
Sbjct: 253 FVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDL 311
Score = 35.5 bits (78), Expect = 0.033
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +I+++ PN++E ++HR GRTGR+
Sbjct: 417 VDLIIHYELPNNTETFVHRTGRTGRA 442
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/65 (41%), Positives = 43/65 (66%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+ +IF TKRK + +S +R + + MHGD Q+ERD ++ +F+ G + +L+ TDV A
Sbjct: 276 QAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWA 335
Query: 493 RGLDV 507
RG+DV
Sbjct: 336 RGIDV 340
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/56 (35%), Positives = 34/56 (60%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
L+LDE+D ML GF+ QI + + PD Q + SAT P E+ ++ ++ + ++I
Sbjct: 181 LILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKI 236
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D PN+ E YIHRIGR+GR
Sbjct: 343 VSLVINYDLPNNRELYIHRIGRSGR 367
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 64.9 bits (151), Expect = 5e-11
Identities = 31/67 (46%), Positives = 45/67 (67%)
Frame = +1
Query: 307 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDV 486
G K I+F +TKR A+ ++ + + + +HGD +Q +R+ L F++G SILVATDV
Sbjct: 361 GGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILVATDV 419
Query: 487 AARGLDV 507
AARGLDV
Sbjct: 420 AARGLDV 426
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/59 (37%), Positives = 41/59 (69%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
++VLDEAD+ML +GF + I++++ RQ++M+SAT P ++ L + YL + + I++
Sbjct: 265 FVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDL 323
Score = 35.9 bits (79), Expect = 0.025
Identities = 12/26 (46%), Positives = 21/26 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ VI+++ PN++E ++HR GRTGR+
Sbjct: 429 VDLVIHYELPNNTETFVHRTGRTGRA 454
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 64.5 bits (150), Expect = 6e-11
Identities = 30/82 (36%), Positives = 52/82 (63%)
Frame = +1
Query: 262 KLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLY 441
+L LL E+G+ I+FV TK+ ++I++N+ + G+ +HG K+Q++R+ L
Sbjct: 566 RLQKLLDELGEKT-----AIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLE 620
Query: 442 QFKEGRASILVATDVAARGLDV 507
F+ R ++LVATDV RG+D+
Sbjct: 621 GFRAKRYNVLVATDVVGRGIDI 642
Score = 58.8 bits (136), Expect = 3e-09
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 17/102 (16%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD------------RQTLMWSATWP 130
+C Y+VLDEADRM+DMGFEPQ+ +++ ++P+ R T M+SAT P
Sbjct: 463 QCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMP 522
Query: 131 KEVKKLAEDYLGDYIQINIGSLQLSANHNILQIVDICQEHEK 256
V++LA YL + + + IG+ + + I Q V + +E EK
Sbjct: 523 PGVERLARKYLRNPVVVTIGTAGKTTD-LISQHVIMMKESEK 563
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +VIN+D P E Y HRIGRTGR+
Sbjct: 645 VAHVINYDMPKHIEMYTHRIGRTGRA 670
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 64.1 bits (149), Expect = 8e-11
Identities = 29/67 (43%), Positives = 45/67 (67%)
Frame = +1
Query: 307 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDV 486
G KTI+F +TKR A+ +S + +HGD +Q +R+ L F++G+ ++LVATDV
Sbjct: 351 GGKTIVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDV 409
Query: 487 AARGLDV 507
A+RGLD+
Sbjct: 410 ASRGLDI 416
Score = 62.5 bits (145), Expect = 2e-10
Identities = 29/59 (49%), Positives = 42/59 (71%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
YLVLDEAD+ML +GFE + I+E + RQ++++SAT P VKKLA YL + + I++
Sbjct: 255 YLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDL 313
Score = 34.3 bits (75), Expect = 0.075
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ VI+++ PN E ++HR GRTGR+
Sbjct: 419 VDLVIHYELPNDPETFVHRSGRTGRA 444
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/65 (40%), Positives = 45/65 (69%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+ IIF T++K + ++ +R + MHGDK Q+ERD+++ QF+ ++ +L+A+DV A
Sbjct: 263 QAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWA 322
Query: 493 RGLDV 507
RG+DV
Sbjct: 323 RGIDV 327
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/81 (32%), Positives = 44/81 (54%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
LVLDE+D ML G + QI + + D Q + SAT P+E+ ++ E ++ D ++I +
Sbjct: 168 LVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKP 227
Query: 194 LQLSANHNILQIVDICQEHEK 256
+L+ VD+ +E K
Sbjct: 228 DELTLEGIKQYYVDVDKEEWK 248
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ +VIN+D PN+ E YIHRIGR GR
Sbjct: 330 VSHVINYDIPNNPELYIHRIGRAGR 354
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 59.3 bits (137), Expect = 2e-09
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 238 LSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ 417
LS K KLN LL + +Q +IFV++ +A +++ + +P++C+H +Q
Sbjct: 270 LSEMEKNRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Query: 418 QERDEVLYQFKEGRASILVATDVAARGLDV 507
+ER FKEG ILVATD+ RG+D+
Sbjct: 325 EERLTRYKSFKEGHKRILVATDLVGRGIDI 354
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 YLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+ +LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D ++I +
Sbjct: 193 HFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252
Query: 188 GSLQLSANHNILQIVDICQEHEK 256
H ++Q E EK
Sbjct: 253 DDEAKLTLHGLVQHYIKLSEMEK 275
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D P+S++ Y+HR+GR GR
Sbjct: 357 VNIVINYDMPDSADTYLHRVGRAGR 381
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 238 LSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ 417
LS K KLN LL + +Q +IFV++ +A +++ + +P++C+H +Q
Sbjct: 187 LSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 241
Query: 418 QERDEVLYQFKEGRASILVATDVAARGLDV 507
+ER FKEG ILVATD+ RG+D+
Sbjct: 242 EERLTRYKSFKEGHKRILVATDLVGRGIDI 271
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 YLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+ +LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D ++I +
Sbjct: 110 HFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 169
Query: 188 GSLQLSANHNILQIVDICQEHEK 256
H ++Q E EK
Sbjct: 170 DDEAKLTLHGLVQHYIKLSEMEK 192
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D P+S++ Y+HR+GR GR
Sbjct: 274 VNIVINYDMPDSADTYLHRVGRAGR 298
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 58.8 bits (136), Expect = 3e-09
Identities = 32/90 (35%), Positives = 51/90 (56%)
Frame = +1
Query: 238 LSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ 417
LS K KLN LL + +Q +IFV++ +A +++ + +P++C+H +Q
Sbjct: 270 LSEMEKTRKLNDLLDALDFNQ-----VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQ 324
Query: 418 QERDEVLYQFKEGRASILVATDVAARGLDV 507
+ER FKEG ILVATD+ RG+D+
Sbjct: 325 EERLTRYKSFKEGHKRILVATDLVGRGIDI 354
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 11 YLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+ +LDE D+ML+ + +++I + D+Q +M+SAT KE++ + + ++ D ++I +
Sbjct: 193 HFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYV 252
Query: 188 GSLQLSANHNILQIVDICQEHEK 256
H ++Q E EK
Sbjct: 253 DDEAKLTLHGLVQHYIKLSEMEK 275
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VIN+D P+S++ Y+HR+GR GR
Sbjct: 357 VNIVINYDMPDSADTYLHRVGRAGR 381
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 56.8 bits (131), Expect = 1e-08
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
L+LDEADR+LD F+ Q+ II Q+ RQTL++SAT K+VK LA L D I++ +
Sbjct: 222 LILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISVHA 281
Query: 194 LQLSANHNILQIVDICQEHEKKIN 265
++A L + EKK++
Sbjct: 282 EAVTATPTSLMQTVMIVPVEKKLD 305
Score = 46.0 bits (104), Expect = 2e-05
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISR--NIRRYGWPAVCMHGDKTQQERD 429
E KL++L I ++ ++F+ TK++ + + N R G P +HG +Q++R
Sbjct: 301 EKKLDMLWSFI--KTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRM 358
Query: 430 EVLYQFKEGRASILVATDVAARGLD 504
V QF E R S+L TDV ARGLD
Sbjct: 359 GVYSQFIE-RQSVLFCTDVLARGLD 382
Score = 30.7 bits (66), Expect = 0.93
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ +V+ D P YIHR+GRT R
Sbjct: 387 VDWVVQVDCPEDVASYIHRVGRTAR 411
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 190
YLVLDEADR+L+ FE + +I+E+I +R+T ++SAT K+V+KL L + ++I
Sbjct: 167 YLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAA 226
Query: 191 S 193
S
Sbjct: 227 S 227
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +1
Query: 295 SQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILV 474
S+ P + ++IF T ++ +R G+ A+ + G TQ +R L +FK G +ILV
Sbjct: 256 SEMPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILV 315
Query: 475 ATDVAARGLDV 507
TDVA+RGLD+
Sbjct: 316 CTDVASRGLDI 326
Score = 40.7 bits (91), Expect = 9e-04
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ VIN+D P +S+DYIHR+GRT R+
Sbjct: 329 VDVVINYDIPTNSKDYIHRVGRTARA 354
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C LV+DEAD++L + F+P I ++I+ + RQ LM+SAT+P VK + YL IN
Sbjct: 297 CAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIIN 356
Query: 185 I 187
+
Sbjct: 357 L 357
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
++IIF + + E +++ I G+ +H Q R+ V + F+ G LV TD+
Sbjct: 393 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFT 452
Query: 493 RGLDVVVSNM 522
RG+D+ N+
Sbjct: 453 RGIDIQAVNV 462
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD+P +SE Y+HR+GR+GR
Sbjct: 460 VNVVINFDFPRTSESYLHRVGRSGR 484
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+++IFV T+RK + ++ +R HGD Q RD ++ +F+ G + +L+ TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 493 RGLDV 507
RG+DV
Sbjct: 340 RGIDV 344
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
VLDEAD ML GF+ QI I + + P Q ++SAT P E ++ ++ ++I
Sbjct: 186 VLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD P E+Y+HRIGR+GR
Sbjct: 347 VSLVINFDLPTQPENYLHRIGRSGR 371
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+++IFV T+RK + ++ +R HGD Q RD ++ +F+ G + +L+ TD+ A
Sbjct: 282 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 341
Query: 493 RGLDV 507
RG+DV
Sbjct: 342 RGIDV 346
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
VLDEAD ML GF+ QI I + + Q ++SAT P E ++ ++ ++I
Sbjct: 188 VLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRI 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD P E+Y+HRIGR+GR
Sbjct: 349 VSLVINFDLPTQPENYLHRIGRSGR 373
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/65 (35%), Positives = 40/65 (61%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+++IFV T+RK + ++ +R HGD Q RD ++ +F+ G + +L+ TD+ A
Sbjct: 280 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339
Query: 493 RGLDV 507
RG+DV
Sbjct: 340 RGIDV 344
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 181
VLDEAD ML GF+ QI I + + P Q ++SAT P E ++ ++ ++I
Sbjct: 186 VLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD P E+Y+HRIGR+GR
Sbjct: 347 VSLVINFDLPTQPENYLHRIGRSGR 371
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 148
LVLDEAD +LDMGF I +II + +RQT ++SAT P+EV+++
Sbjct: 213 LVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
K I+F T + ++ + +H K Q R V +F++ + ILV +DV+A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 493 RGLD 504
RG+D
Sbjct: 374 RGVD 377
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ V+ P E YIHR+GRTGR
Sbjct: 381 VTLVLQVGLPKDREQYIHRLGRTGR 405
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 54.0 bits (124), Expect = 9e-08
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Frame = +1
Query: 196 TTFRKSQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRR 375
+T K ++ ++ + E+KL LLQ + S G+K ++F T + + +
Sbjct: 333 STLHKKIANARHDFIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSE 392
Query: 376 YGWPAVCMHGDKTQQERDEVLYQFK--EGRASILVATDVAARGLDVVVSNM 522
V HG+ ++R E L +FK EG LV TD+AARGLD+ V ++
Sbjct: 393 NQISTVNYHGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDLDVDHV 443
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRP------DR--QTLMWSATWPKEVKKLAED 157
YLVLDEAD M D GF P+IRK + + D+ QT++ +AT V+KL ++
Sbjct: 266 YLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDE 322
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ +V+ FD+P +S DY+HR GRT R
Sbjct: 440 VDHVVMFDFPKNSIDYLHRTGRTAR 464
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/84 (34%), Positives = 46/84 (54%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
+E KL L Q +S P +IFV++K +A+ + ++ A +H D ER+
Sbjct: 364 EEGKLLALRQSFAESLNP--PVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGEREN 421
Query: 433 VLYQFKEGRASILVATDVAARGLD 504
+ QF+ G +L+ATDV ARG+D
Sbjct: 422 AVDQFRAGEKWVLIATDVIARGMD 445
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRS 590
GI VIN+D+P+S+ YIHRIGR+GR+
Sbjct: 448 GINCVINYDFPDSASAYIHRIGRSGRA 474
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
YLVLDE+D++ + QI +++ P ++SAT P V++LA + D +++ I
Sbjct: 285 YLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVII 344
Query: 188 GSLQLSANHNILQIVDICQEHEKKI 262
G + +A+ + Q + E K+
Sbjct: 345 GR-KNTASETVKQKLVFAGSEEGKL 368
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 53.2 bits (122), Expect = 2e-07
Identities = 32/100 (32%), Positives = 56/100 (56%)
Frame = +1
Query: 208 KSQHSSNCRYLSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWP 387
K + S++ R+++ + + L+ +I G +TIIF ETK + +S +
Sbjct: 317 KMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDG---- 372
Query: 388 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
+ +HG+ Q +R+ L F+ G+ + LVAT+VAARGLD+
Sbjct: 373 SRALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDI 412
Score = 44.8 bits (101), Expect = 5e-05
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKKLAEDYL-GDYIQI 181
+ VLDEAD ML MGF + I+ ++ QTL++SAT P VK ++ +L D I
Sbjct: 251 FRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTI 310
Query: 182 N-IGSLQLSANHNILQIVDICQE 247
+ +G+ ++ A++++ I C +
Sbjct: 311 DLVGNDKMKASNSVRHIAIPCNK 333
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
++ +I + P E YIHR GRTGR+
Sbjct: 415 VQLIIQCEPPREVEAYIHRSGRTGRA 440
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 148
LVLDEAD +LDMGF I +II + RQT ++SAT P+EV+++
Sbjct: 541 LVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 38.3 bits (85), Expect = 0.005
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +1
Query: 265 LNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQ 444
L+VLL+E + K IIF T ++ + + +H K Q R V +
Sbjct: 627 LHVLLKE-HIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDE 685
Query: 445 FKEGRASILVATDVAARGLD 504
F++ +A ILV +DV+ARG+D
Sbjct: 686 FRKSKAIILVTSDVSARGVD 705
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ V+ P+ E YIHR+GRTGR
Sbjct: 709 VSLVVQMGLPSDREQYIHRLGRTGR 733
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 53.2 bits (122), Expect = 2e-07
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKT-IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERD 429
K+ K L+ + Q ++ G ++ +IFV T R + +S + + MH +Q R
Sbjct: 283 KDAKELYLVHILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRL 342
Query: 430 EVLYQFKEGRASILVATDVAARGLDV 507
L +FK G+ IL+ATDVA+RGLD+
Sbjct: 343 SALSKFKSGKVPILLATDVASRGLDI 368
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +2
Query: 2 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 154
R +LVLDEADR+LD+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 203 RTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ VIN+D P DY+HR+GRT R+
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARA 396
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/61 (39%), Positives = 38/61 (62%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P VK + +L + IN
Sbjct: 274 CSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVIN 333
Query: 185 I 187
+
Sbjct: 334 L 334
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
++IIF + + E +++ I G+ +H Q R+ V + F+ G LV TD+
Sbjct: 370 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 429
Query: 493 RGLDVVVSNM 522
RG+D+ N+
Sbjct: 430 RGIDIQAVNV 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD+P ++E Y+HR+GR+GR
Sbjct: 437 VNVVINFDFPKNAETYLHRVGRSGR 461
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/61 (39%), Positives = 38/61 (62%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P VK + +L + IN
Sbjct: 274 CSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVIN 333
Query: 185 I 187
+
Sbjct: 334 L 334
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
++IIF + + E +++ I G+ +H Q R+ V + F+ G LV TD+
Sbjct: 370 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFT 429
Query: 493 RGLDVVVSNM 522
RG+D+ N+
Sbjct: 430 RGIDIQAVNV 439
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/25 (56%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD+P ++E Y+HR+GR+GR
Sbjct: 437 VNVVINFDFPKNAETYLHRVGRSGR 461
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGS 193
++DEAD +LD+GF+ + KII+ + RQ+L++SAT PKEV+++++ L D+ I+
Sbjct: 536 IVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIG 595
Query: 194 LQLSANHNILQIVDICQEHE 253
L H+ ++ I HE
Sbjct: 596 LGCVETHDKVKQSCIVAPHE 615
Score = 34.3 bits (75), Expect = 0.075
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +1
Query: 304 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATD 483
P K I+F T + +R +H K Q R V +FKE ILV +D
Sbjct: 633 PDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSD 692
Query: 484 VAARGLD 504
V+ARG++
Sbjct: 693 VSARGMN 699
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VI P+ E YIHR+GRTGR
Sbjct: 703 VTLVIQVGIPSDREQYIHRLGRTGR 727
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 52.4 bits (120), Expect = 3e-07
Identities = 33/91 (36%), Positives = 51/91 (56%)
Frame = +1
Query: 238 LSRT*KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQ 417
+ RT + N+ VLL ++ + +K IIF TK+ A + G A +HG+ TQ
Sbjct: 391 IRRTREANQEAVLLSLCTRTFK--SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQ 448
Query: 418 QERDEVLYQFKEGRASILVATDVAARGLDVV 510
+R + L F++ L+ATDVAARGLD++
Sbjct: 449 AQRLDSLELFRKQEVDFLIATDVAARGLDII 479
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/47 (44%), Positives = 33/47 (70%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 154
L+LDEADR+L GF +I +++ RQT+++SAT +EVK+L +
Sbjct: 317 LILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRS 590
G++ VIN+ P + Y+HR+GRT R+
Sbjct: 480 GVQTVINYACPREIDSYVHRVGRTARA 506
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL-GDYIQINIGS 193
++DEAD +LD+GF + KII+ + RQ+L++SAT PKEV+++++ L D+ I+
Sbjct: 489 IVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIG 548
Query: 194 LQLSANHNILQIVDICQEHE 253
L H+ ++ I HE
Sbjct: 549 LGCVETHDKVRQSCIVAPHE 568
Score = 35.9 bits (79), Expect = 0.025
Identities = 22/67 (32%), Positives = 31/67 (46%)
Frame = +1
Query: 304 PGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATD 483
P K I+F T + +R +H K Q R V +FKE ILV +D
Sbjct: 586 PDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSD 645
Query: 484 VAARGLD 504
V+ARG++
Sbjct: 646 VSARGMN 652
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VI P+ E YIHR+GRTGR
Sbjct: 656 VTLVIQVGIPSDREQYIHRLGRTGR 680
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P VK + +L IN
Sbjct: 267 CAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVIN 326
Query: 185 I 187
+
Sbjct: 327 L 327
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
++IIF + + E +++ I G+ +H Q R+ V ++F+ G LV TD+
Sbjct: 363 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFT 422
Query: 493 RGLDVVVSNM 522
RG+D+ N+
Sbjct: 423 RGIDIQAVNV 432
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD+P +SE Y+HR+GR+GR
Sbjct: 430 VNVVINFDFPRTSESYLHRVGRSGR 454
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIN 184
C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P VK + +L IN
Sbjct: 267 CAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVIN 326
Query: 185 I 187
+
Sbjct: 327 L 327
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
++IIF + + E +++ I G+ +H Q R+ V ++F+ G LV TD+
Sbjct: 363 QSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFT 422
Query: 493 RGLDVVVSNM 522
RG+D+ N+
Sbjct: 423 RGIDIQAVNV 432
Score = 42.7 bits (96), Expect = 2e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ VINFD+P +SE Y+HR+GR+GR
Sbjct: 430 VNVVINFDFPRTSESYLHRVGRSGR 454
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 52.0 bits (119), Expect = 4e-07
Identities = 33/99 (33%), Positives = 57/99 (57%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+ L + +++ G+
Sbjct: 171 LILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEVISGA 230
Query: 194 LQLSANHNILQIVDICQEHEKKIN*MYYCKKLDKVKNLV 310
S + L + E ++K + + + +K K LV
Sbjct: 231 ESKSKTSSGLYCEYLKCEADQKSSQLVHLLIENKNKKLV 269
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 400 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
HG Q+ RD L F E + +L+ TDVAARGLD+
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 335
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRSKIQ 599
GI YV+ +D P + +IHR+GRT R + Q
Sbjct: 337 GIDYVVQYDPPQDPDVFIHRVGRTARMERQ 366
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/58 (39%), Positives = 42/58 (72%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT + V++LA+ L + +++ +
Sbjct: 171 LILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEV 228
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
+HGD Q RD+ L F + + L+ TDVAARGLD+
Sbjct: 308 IHGDMKQNARDKALASFTKASSGALLCTDVAARGLDI 344
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGR 587
GI YV+ +D P + HR GRT R
Sbjct: 346 GIDYVVQYDPPQDPNMFNHRAGRTAR 371
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/45 (51%), Positives = 32/45 (71%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 148
LVLDEAD +LDMGF +I +II + RQT ++SAT EV+++
Sbjct: 239 LVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +1
Query: 307 GAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDV 486
G K IIF T ++ + + +H K Q R V +F++ ++ ILV +DV
Sbjct: 338 GYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDV 397
Query: 487 AARGLD 504
+ARG+D
Sbjct: 398 SARGVD 403
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGR 587
+ V+ P+ E YIHR+GRTGR
Sbjct: 407 VSLVVQMGLPSDREQYIHRLGRTGR 431
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 154
Y+V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 176 YVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 ENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGW-PAVCMHGDKTQQERDE 432
E K + LL + + +T+IFV TK E ++ + P+VC +GD Q R
Sbjct: 254 EEKYSALLYLVREHISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVC-YGDMDQDARKI 312
Query: 433 VLYQFKEGRASILVATDVAARGLDV 507
+ +F+ + +L+ TD+AARG+D+
Sbjct: 313 HVSRFRARKTMLLIVTDIAARGIDI 337
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGRS 590
VIN+D+P + ++HR+GR R+
Sbjct: 343 VINWDFPPRPKIFVHRVGRAARA 365
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/47 (48%), Positives = 34/47 (72%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 154
L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 164 LILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 400 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
HG Q+ RD L F E + +L+ TDVAARGLD+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +2
Query: 11 YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
+LV+DEADR+L+ FE ++KI+ + RQT ++SAT +V+ LA L + I++
Sbjct: 304 FLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDV 362
Score = 35.5 bits (78), Expect = 0.033
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSK 593
+ +++ +D P++ DYIHR+GRT R +
Sbjct: 469 VDWIVQYDPPDNPTDYIHRVGRTARGE 495
Score = 33.9 bits (74), Expect = 0.100
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
K ++F T + + + R + + + G Q +R QF + IL+ T+VAA
Sbjct: 402 KIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAA 461
Query: 493 RGLD 504
RGLD
Sbjct: 462 RGLD 465
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/58 (39%), Positives = 37/58 (63%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
LV+DEADR+L+ FE + KI++ + RQT ++SAT +VK LA L + +++
Sbjct: 240 LVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLARVSLTSPVHVDV 297
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
+HG Q R + + F + + IL+ TDVAARGLD+
Sbjct: 364 IHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDI 400
Score = 33.9 bits (74), Expect = 0.100
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSK 593
+ ++I +D P+ +YIHR+GRT R +
Sbjct: 403 VDWIIQYDPPDKPTEYIHRVGRTARGE 429
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY-GWPAVCMHGDKTQQERD 429
K+ KL +L+ + P +++V ++ A+ ++ I G A+ +HG+K +ER
Sbjct: 342 KKQKLFDILRSQNHFKPPA---VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERR 398
Query: 430 EVLYQFKEGRASILVATDVAARGLDVVVSNMXXXXXXXXXXXXTSIVLGELDVPKSKGTS 609
+V+ F G +LV+T V RG+D++V V+G KGT+
Sbjct: 399 DVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTA 458
Query: 610 ICFL 621
I F+
Sbjct: 459 IVFV 462
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
VLDE D ML GF Q+ +I + + Q L++SAT +EV+K+ + I ++IG+
Sbjct: 265 VLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGN 322
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 47.2 bits (107), Expect = 1e-05
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 1/124 (0%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRY-GWPAVCMHGDKTQQERD 429
K+ KL +L+ + P +++V ++ A+ ++ I G A+ +HG+K +ER
Sbjct: 205 KKQKLFDILRSQNHFKPPA---VVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERR 261
Query: 430 EVLYQFKEGRASILVATDVAARGLDVVVSNMXXXXXXXXXXXXTSIVLGELDVPKSKGTS 609
+V+ F G +LV+T V RG+D++V V+G KGT+
Sbjct: 262 DVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTA 321
Query: 610 ICFL 621
I F+
Sbjct: 322 IVFV 325
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +2
Query: 17 VLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 193
VLDE D ML GF Q+ +I + + Q L++SAT +EV+K+ + I ++IG+
Sbjct: 128 VLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGN 185
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 319 IIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARG 498
I F+ R+ +++ + G + MHGD + R VL +FK G +LV +++ARG
Sbjct: 411 IAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARG 470
Query: 499 LDV 507
LDV
Sbjct: 471 LDV 473
Score = 35.5 bits (78), Expect = 0.033
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 14/66 (21%)
Frame = +2
Query: 5 CTYLVLDEADRMLDMGFEPQIRKIIEQI--------------RPDRQTLMWSATWPKEVK 142
C +LVLDE D +L F I +I+E + R +RQT++ SAT P V
Sbjct: 268 CRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVI 327
Query: 143 KLAEDY 160
+ A+ +
Sbjct: 328 RAAKSW 333
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGR 587
V+N + P + Y HR GRTGR
Sbjct: 479 VVNLELPTDAVHYAHRAGRTGR 500
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1029
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/85 (23%), Positives = 47/85 (55%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
+ +K+ LL+E+ + G+K+I+F + + + + R + V + G +QQ+R++
Sbjct: 861 ESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREK 920
Query: 433 VLYQFKEGRASILVATDVAARGLDV 507
VL +F E + +++ + A G+ +
Sbjct: 921 VLKEFSEDGSILVLLMSLKAGGVGI 945
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGRS 590
VINFD P S YIHRIGRTGR+
Sbjct: 408 VINFDMPQSVTGYIHRIGRTGRA 430
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 187
LVLDEAD +L G+E +R + I Q L+ SAT +V+KL + L + I + +
Sbjct: 204 LVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 39.1 bits (87), Expect = 0.003
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Frame = +1
Query: 112 VVSYLAQRSKETC*GLLGRLHSDQYRIITTF-RKSQHSSNCRYLSRT*KENKLNVLLQEI 288
+ + L K+T G+L + D + F ++ +++ T +++++ L++ +
Sbjct: 358 IAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLKQKWVEVT-VDSQVDALIEAV 416
Query: 289 GQSQEPGA-KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRAS 465
+ +T++F T E ++ + + H + ER +L F+E
Sbjct: 417 KNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGG 475
Query: 466 ILVATDVAARGLDV 507
+ V TD AARG+DV
Sbjct: 476 VFVCTDAAARGVDV 489
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
+ +VI D+ +S+ D++HRIGRT R+
Sbjct: 492 VSHVIQADFASSAVDFLHRIGRTARA 517
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 2 RCT-YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQ 178
RC Y+V DEAD +L F+ QI ++I +R D K+V +LA+ LG ++
Sbjct: 236 RCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE----------KQVSRLAKSNLGRPME 285
Query: 179 INIGSLQL 202
I+ Q+
Sbjct: 286 IDASVPQI 293
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Frame = +1
Query: 256 ENKLNVLLQEIGQSQEPGAKTIIF---VETKRKAENISRNIRR--YGWPAVCMHGDKTQQ 420
+NK LLQ + + P +KTIIF +ET RK ENI + + R + H +Q+
Sbjct: 620 QNKKTALLQIM--EENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQE 677
Query: 421 ERDEVLYQF----KEGRASILVATDVAARGLD 504
R + +F E + LV TD A+RG+D
Sbjct: 678 SRLTNMQEFTSSQPEENSLFLVCTDRASRGID 709
Score = 34.7 bits (76), Expect = 0.057
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGR 587
G+ +V+ FD+P +Y+ R+GRT R
Sbjct: 712 GVDHVVLFDFPRDPSEYVRRVGRTAR 737
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLD 504
+HG Q++R FK + ++L++TDVAARGLD
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLD 414
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRSKIQRDIHMLSLPLQI 635
++ +I +D P + +Y+HR+GRT R + + + P++I
Sbjct: 418 VRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEI 458
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +2
Query: 14 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYI-QINIG 190
LV+DE + G+ ++ I + I QT++++ ++ + + +LG + ++ +
Sbjct: 274 LVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASIIPAVQSFLGGSVNRVTVN 333
Query: 191 SLQLSANHNILQIVDICQEHEKKIN*MYYCKKLD 292
S I Q V +C EKK+ + K LD
Sbjct: 334 ESVASQGSCITQTVSVCASEEKKL--QKFAKHLD 365
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +1
Query: 313 KTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAA 492
+TI+F + +IS ++ G + + Q+ R + + +F+ IL+ATD+ A
Sbjct: 504 RTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVA 563
Query: 493 RGLDV 507
RG+D+
Sbjct: 564 RGIDI 568
Score = 32.7 bits (71), Expect = 0.23
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 513 IKYVINFDYPNSSEDYIHRIGRTGRS 590
++ +I++ P+S+E Y+HR GRT R+
Sbjct: 571 VRTIIHYKLPHSAEVYVHRCGRTARA 596
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 8 TYLVLDEADRMLDMGFEPQIRKIIE 82
++ VLDEADRM++ G +++ I++
Sbjct: 358 SFFVLDEADRMVERGHFRELQSILD 382
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 36.3 bits (80), Expect = 0.019
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +1
Query: 307 GAKTIIFVETKRKAENISRNIRRYGWPAVCMH---GDKTQQERDEVLYQFKEGRASILVA 477
G K IIF + + + + +G P + G Q R + L F++G +LVA
Sbjct: 325 GEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVA 384
Query: 478 TDVAARGLDV 507
+D RG+DV
Sbjct: 385 SDALTRGMDV 394
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 510 GIKYVINFDYPNSSEDYIHRIGRTGRS 590
G+ VIN+D P ++ +IHR GRT R+
Sbjct: 396 GVTNVINYDMPPFAKTFIHRAGRTARA 422
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 519 YVINFDYPNSSEDYIHRIGRTGR 587
++ NFD P + DY+HR GR GR
Sbjct: 412 HIFNFDLPQTVTDYLHRAGRAGR 434
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
+ GD R L + ++G +LV+TD+AARG+D+
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDL 407
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 34.7 bits (76), Expect = 0.057
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 519 YVINFDYPNSSEDYIHRIGRTGR 587
++ NFD P + DY+HR GR GR
Sbjct: 255 HIFNFDLPQTVTDYLHRAGRAGR 277
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDV 507
+ GD R L + ++G +LV+TD+AARG+D+
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDL 250
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 34.3 bits (75), Expect = 0.075
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = +1
Query: 406 DKTQQERDEVLYQFKEGRASILVATDVAARGLDVVVSNM 522
++T+++++E++ F+ G +I+VAT + GLDV N+
Sbjct: 429 NQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNL 467
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 33.9 bits (74), Expect = 0.100
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +1
Query: 400 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVVVSN 519
HG + ++ +E + +F +G+ IL+ T++ GLD+ +N
Sbjct: 513 HGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNAN 552
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 397 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVVVSNM 522
+HG +++E L +F+ G IL++T V G+DV ++M
Sbjct: 802 LHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASM 843
>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
to WRN (Werner syndrome) protein - Mus musculus,
EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00627: UBA/TS-N domain
Length = 858
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +1
Query: 316 TIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAAR 495
TII+V T++++ NI++ + G A + ++ +V F + + ++VAT
Sbjct: 500 TIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGM 559
Query: 496 GLD 504
G+D
Sbjct: 560 GID 562
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 31.9 bits (69), Expect = 0.40
Identities = 21/83 (25%), Positives = 43/83 (51%)
Frame = +1
Query: 253 KENKLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDE 432
K ++L L++I +S G K+I+F + + + +RR G+ + G Q+ R++
Sbjct: 1110 KVSELLKCLEKIKKSGS-GEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREK 1168
Query: 433 VLYQFKEGRASILVATDVAARGL 501
VL +F E + ++ + A G+
Sbjct: 1169 VLKEFNETKQKTILLMSLKAGGV 1191
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 31.9 bits (69), Expect = 0.40
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +1
Query: 409 KTQQERDEVLYQFKEGRASILVATDVAARGLDVVVSNM 522
K+ Q +D + +F++G ++LVAT VA GLD+ N+
Sbjct: 708 KSSQMQDTIS-KFRDGHVTLLVATSVAEEGLDIRQCNV 744
>At4g01800.1 68417.m00237 preprotein translocase secA subunit,
putative similar to preprotein translocase secA subunit,
chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis
thaliana]; non-consensus GA donor splice site at exon 4
Length = 1022
Score = 31.5 bits (68), Expect = 0.53
Identities = 15/84 (17%), Positives = 40/84 (47%)
Frame = +1
Query: 262 KLNVLLQEIGQSQEPGAKTIIFVETKRKAENISRNIRRYGWPAVCMHGDKTQQERDEVLY 441
K ++ EI + + G ++ + +++ +S+ +R G ++ ER+ +
Sbjct: 489 KWRAVVVEISRMHKTGRAVLVGTTSVEQSDELSQLLREAGITHEVLNAKPENVEREAEIV 548
Query: 442 QFKEGRASILVATDVAARGLDVVV 513
++ +AT++A RG D+++
Sbjct: 549 AQSGRLGAVTIATNMAGRGTDIIL 572
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 522 VINFDYPNSSEDYIHRIGRTGR 587
VI+F P S E+Y+ IGR GR
Sbjct: 558 VIHFSVPGSMEEYVQEIGRAGR 579
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 515 QICNKF*LSKFVGGLHPSYWENWTFQNPKGHPYAFFTPSNSRQ 643
QI KF S F+ + SYW+ W + P T R+
Sbjct: 278 QISEKFQFSAFIENIRLSYWKGWHDEGNLDFPVEIMTGDRQRK 320
>At4g03070.1 68417.m00415 2-oxoglutarate-dependent dioxygenase
(AOP1.2) identical to GI:16118887; contains PF03171:
2OG-Fe(II) oxygenase superfamily domain
Length = 322
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 118 SYLAQRSKETC*GLLGRLHSDQYRIITTFRKSQHSSNCRYLSRT 249
S L C L GRLHS +R+I T +K+++S+ + +T
Sbjct: 230 SVLVMVGDSLCALLNGRLHSPYHRVIMTGKKTRYSTGLFSIPKT 273
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 29.1 bits (62), Expect = 2.8
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 409 KTQQERDEVLYQFKEGRASILVATDVAARGLDVV 510
++Q+ + VL +F+ G +++VAT + GLD++
Sbjct: 511 QSQKIQQAVLEKFRAGGFNVIVATSIGEEGLDIM 544
>At4g03390.1 68417.m00461 leucine-rich repeat transmembrane protein
kinase, putative similar to Z. mays leucine-rich repeat
transmembrane protein kinase LRRTPK 1, GenBank accession
number AF023164
Length = 776
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 131 KEVKKLAEDYLGDYIQIN-IGSLQLSANHNILQIVDICQEHEKKIN*MYYC 280
K++ K A + D+ I + ++ + + NI+++V C EH++++ YC
Sbjct: 513 KKLDKRASEQQQDHEFIELVNNIDMIRHSNIVELVGYCAEHDQRLLVYEYC 563
>At5g32169.1 68418.m03692 hypothetical protein
Length = 258
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -3
Query: 358 ICSQLFSWFQQKLLFSHQVLDFVQFLAIIHLIYFLFMFLTNIYNLKNV 215
+CS+LF LFS Q L + F + +I L +++NL NV
Sbjct: 204 LCSRLFVIRISLYLFSIQFLYLISFTVVHSVIILLLHCCYHVFNLFNV 251
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 35 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 169
++L MG+ + ++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Frame = +1
Query: 301 EPGAKTIIFVE---TKRKAENISRNIRRY-GWPAVCMHG------DKTQQERDEVLYQFK 450
EP K IIFV T R I N+ W + + G +++ + +L +F+
Sbjct: 509 EPHMKCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQ 568
Query: 451 EGRASILVATDVAARGLDV 507
++LVAT V GLD+
Sbjct: 569 SKELNLLVATKVGEEGLDI 587
>At1g74830.1 68414.m08670 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 542
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = +2
Query: 236 ICQEHEKKIN*MYYC---KKLDKVKNL 307
IC H+KK++ + YC KKL ++K++
Sbjct: 99 ICDSHKKKVSSLAYCHVHKKLSEIKHM 125
>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
putative contains Pfam domains PF00560: Leucine Rich
Repeat and PF00069: Protein kinase domain
Length = 772
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +2
Query: 164 GDYIQINIGSLQLSANHNILQIVDICQEHEKKIN*MYYCK 283
G ++++ + ++ + NI+Q+V C EH +++ YC+
Sbjct: 516 GKFLEL-VNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCR 554
>At1g74790.1 68414.m08665 expressed protein contains similarity to
hedgehog-interacting protein GI:4868122 from [Mus
musculus]
Length = 695
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 513 YHNIKPSSCNISCYKNTST 457
Y ++PS CN++C K ST
Sbjct: 632 YRVVRPSRCNLTCSKENST 650
>At1g25330.1 68414.m03143 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 223
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +1
Query: 343 KAENISRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRAS 465
K E+ S+ R+ M+GD+TQ+ +D V + K G+A+
Sbjct: 72 KEESGSKRRRKRSEEEEAMNGDETQKPKDVVHVRAKRGQAT 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,470,072
Number of Sequences: 28952
Number of extensions: 325351
Number of successful extensions: 1141
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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