Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30130
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 33 0.046
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.3
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 2.3
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 3.0
SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyce... 26 4.0
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.0
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 25 7.0
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 25 9.3
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 9.3
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 25 9.3
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 32.7 bits (71), Expect = 0.046
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 235 EYHENEVRNFSEPTLKNMPQQNV*ILETSFQKQKQETLQRKDASTVHATICSLWTACLVL 414
E E F L N+ + + LE+ QK K++ LQ ++ IC +L
Sbjct: 79 EILSREKEKFRIAKLLNITENEIMSLESQLQKMKEQLLQLEERENTSEDICQSEENANML 138
Query: 415 KVTFY 429
K+ FY
Sbjct: 139 KLNFY 143
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +1
Query: 172 DQVIDTDYPKNKIHLFIHNNVEYHENEVRNFSEPTLKNMPQQNV*ILETSFQKQKQ 339
D+V + YP + F N V +EP++KN N ILE S ++Q+Q
Sbjct: 50 DEVFEDTYPNDDQATF--NLFSDVNTVVTKVTEPSIKNSRPLNYYILEDSPERQRQ 103
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 220 IHNNVEYHENEVRNFSEPTLKNM-PQQNV*ILETSFQKQKQETLQRK 357
+ NNV++ E EV + +PTL M Q+N + + S ++ ++K
Sbjct: 329 LENNVDFVEEEVISTDQPTLDKMKDQENADVNDESILAAAKDKSKKK 375
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/26 (30%), Positives = 22/26 (84%)
Frame = -1
Query: 252 LILVIFYIIVYKQMNFILRIISINDL 175
++L+IF+I+V+ + +++I+S+N++
Sbjct: 2182 ILLLIFFIVVWAVLLSVIKILSLNNV 2207
>SPBC2G5.02c |||CK2 family regulatory subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 76 KEKKIQLKEDNLPSVMMAVFIEQATPFLEDFLDQVIDTDYP 198
+E +++KED + + + A PF + LD ++D P
Sbjct: 51 REYFVEVKEDFIEDLFNLTGLNLAVPFYNEALDLILDRTAP 91
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 172 DQVIDTDYPKNKIHLFIHNNVEYHENEVRNFSEPTLKNMPQQN 300
D+ +D ++PK L EYHE++ + + LKN +++
Sbjct: 27 DESVDDNFPKQFKRLL--QQKEYHESKKKEIKKGNLKNKKKKD 67
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 492 WSNFWGLSTLLDFMRDPQIIWT*YME 569
W+N++ L+T D +R+ Q ++ Y+E
Sbjct: 1062 WNNYFDLNTYADSLRNVQFPYSSYIE 1087
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/36 (22%), Positives = 21/36 (58%)
Frame = +1
Query: 172 DQVIDTDYPKNKIHLFIHNNVEYHENEVRNFSEPTL 279
+Q+++ DY + + I N +++H++ S+ T+
Sbjct: 260 EQILNKDYNTDLLRSIIKNQLKFHQDAAAALSDITI 295
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +1
Query: 64 CVLCKEKKIQLKED----NLPSVMMAVFIEQATPFLEDFLDQVIDTDYPKNKIHL 216
C LC + I D N PS + + I+ + P LEDF ++ N+I +
Sbjct: 731 CRLCVTEYINAAGDGENVNCPSCFIPLSIDLSAPALEDFSEEKFKNASILNRIDM 785
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 429 VKRYFQDETGCPQRTDSRMHC*C 361
++ +F D TG PQ + +C C
Sbjct: 468 IENFFSDGTGSPQSLEVSFYCLC 490
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,810
Number of Sequences: 5004
Number of extensions: 51072
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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