Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30130
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0208 + 10132435-10132558,10133657-10133904                       32   0.34 
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     30   1.4  
08_02_0242 - 14701116-14702666                                         29   4.1  
06_03_0166 + 17408798-17408906,17409247-17409386                       29   4.1  
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    27   9.6  
01_06_1621 - 38705629-38705691,38706074-38706211,38706462-387068...    27   9.6  
01_06_1436 - 37353741-37354525,37356508-37356619                       27   9.6  

>05_03_0208 + 10132435-10132558,10133657-10133904
          Length = 123

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 529 LCEIRRLYGHSIWSYKGSMECA 594
           LC I RLY HS++ Y+G + CA
Sbjct: 98  LCHITRLYAHSLYLYRGFIICA 119


>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 336 ARNLAKERCINSACDYLFSVDSLSRLESNV---LRYLLSSGYDVIAPMLTR 479
           A +L    C+ S  DYL +V  +   E NV   +R+L S  Y V +P+L R
Sbjct: 213 AESLGFHACVKSCLDYLEAVPWVGEEEDNVVSSIRHLQSKAYGV-SPLLKR 262


>08_02_0242 - 14701116-14702666
          Length = 516

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 390 SVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFWGLSTLLDFMRDP 542
           +VD +S L  ++L ++LSS +   A   T   + W   W  + +L+   +P
Sbjct: 3   AVDRISELSDDLLLHILSSLHTKDAAATTVLSRRWRPLWRRTCVLNLYSEP 53


>06_03_0166 + 17408798-17408906,17409247-17409386
          Length = 82

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = +3

Query: 327 EAEARNLAKERCINSACDYLFSVDSLSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNFW 506
           E E  ++    C  S  D L S D   R +  +  YLL+ G+D +        +    + 
Sbjct: 8   EEEGMSIQLRACQRSIEDALVSEDQRRRTDLAITTYLLAVGFDKVKDSGVESPRFSPEYP 67

Query: 507 GLSTLLDFMRDP 542
            L+ +  F+R P
Sbjct: 68  TLAAVKKFVRPP 79


>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 19  HYGNYLAKSWSVNEGCVLCKEKKIQLKEDNLPSVMMAVFIEQATPFLEDFLDQVID 186
           H G   +     NE   L +E  + L E+N    + + +    TP + D + Q+ID
Sbjct: 218 HDGRLPSTRQEKNEFKALIREYMLNLDEENYKEAVESSYKVSVTPGISDEIRQIID 273


>01_06_1621 -
           38705629-38705691,38706074-38706211,38706462-38706850,
           38707012-38707126,38707394-38707711
          Length = 340

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 178 VIDTDYPKNKIHLFIHNNVEYHENEVRNFSEPTLK 282
           ++D+ YP    +L  +   +YH  E +N +EP  K
Sbjct: 284 LVDSGYPNRIGYLAPYKGTKYHLQEFQNAAEPECK 318


>01_06_1436 - 37353741-37354525,37356508-37356619
          Length = 298

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 196 PKNKIHLFIHNNVEYHENEVRNFSEPTLKNMPQQNV*ILETSFQKQKQETLQRKDA 363
           P ++ HL  H   E H+    +  +    N+  +   + E +FQ+  +ETL++K++
Sbjct: 81  PTSEAHLETHK--EKHQGNESDLQKLKTSNVVPEIQPVNEKAFQRHSEETLRKKNS 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,439,583
Number of Sequences: 37544
Number of extensions: 319130
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)