Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30130
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   5e-10
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)                     29   4.2  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               23   9.0  

>SB_30242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 26/64 (40%), Positives = 40/64 (62%)
 Frame = +1

Query: 97  KEDNLPSVMMAVFIEQATPFLEDFLDQVIDTDYPKNKIHLFIHNNVEYHENEVRNFSEPT 276
           KE + P VMMA+FI + TPF+ +F  ++   DYPK KI L+IHN ++ H  EV  +    
Sbjct: 226 KESDYPKVMMAIFISRPTPFVPEFFKRIEALDYPKKKIALYIHNLMDGHTKEVNEWLTEE 285

Query: 277 LKNM 288
           ++ +
Sbjct: 286 IRGL 289



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 327 EAEARNLAKERCINSACDYLFSVDS-LSRLESNVLRYLLSSGYDVIAPMLTRPGKAWSNF 503
           EA ARN A +  I S  DYLF VD+ +       L+ L+     ++ P +++  K WSNF
Sbjct: 302 EAAARNKAVDVAIQSGSDYLFVVDANVVYTNKKSLKLLIEQNRPLLVPKMSKHAKLWSNF 361

Query: 504 WG 509
           WG
Sbjct: 362 WG 363



 Score = 34.3 bits (75), Expect = 0.085
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 506 GALNSAGFYARSADYMDIVYGVIKGVWNVPFI 601
           G +   G+YAR+ DY+DIV     G+WN  ++
Sbjct: 363 GTIGDDGYYARAEDYIDIVEYRRVGIWNSAYV 394


>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 661

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 252 GEKFFGAYSKEYASAKRINSGDFISEAEARNLAKERCINSACDYLF 389
           G K +    KEY   K  N G        RN +KE C++ A ++ F
Sbjct: 89  GWKHWNESRKEYIQKKTNNGGGSRECKLPRNASKEECMSKAKEFFF 134


>SB_2118| Best HMM Match : PAN (HMM E-Value=0.0011)
          Length = 521

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 535 EIRRLYGHSIWSYKGSMECALHLPIC 612
           EIR+ YG++++ +KG      H+ IC
Sbjct: 245 EIRQCYGYNVYKFKGLPPLDAHIMIC 270


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 23.4 bits (48), Expect(2) = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 391 LWTACLVLKVTFYVICSLLAMTSSR 465
           LW   L+  VT++++  +LA  S R
Sbjct: 219 LWPRILITVVTYFMLTIILATDSDR 243



 Score = 22.2 bits (45), Expect(2) = 9.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 325 QKQKQETLQRKDASTVHATICSLWTAC 405
           Q+Q   T+Q K AS V  T+  + T C
Sbjct: 171 QRQYSVTVQEKRASHVILTLTVMVTCC 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,191,532
Number of Sequences: 59808
Number of extensions: 368671
Number of successful extensions: 1054
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)