Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30129
(566 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.12
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 29 0.48
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 3.4
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 26 3.4
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 4.4
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 26 4.4
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 7.7
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 7.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 25 7.7
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 310 LTPALGFTTTVESSTPPTK-SESRTGSFQPVYPNVSRSCVLS 188
+TP + T+T +STPP S S TG+ P+ S SC S
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTS 342
Score = 29.1 bits (62), Expect = 0.48
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = -2
Query: 325 SAEAALTPALGFTTTVESSTPPTKSESRTGSFQPVYPNVSRSCVLS*SSWRRNPRGGRS 149
++ + T T + ST T S S TGS P+ S SC S S P GG S
Sbjct: 73 TSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSI---PPTGGSS 128
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -2
Query: 310 LTPALGFTTTVESSTPPTK-SESRTGSFQPVYPNVSRSCVLS 188
+TP + T+T +STPP S S TG+ + S SC S
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTS 396
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 367 YVDGVAVQYDILNASAEAALTPALGFTTTVESSTPP 260
YVD + V Y I+NA + A T + GFT S P
Sbjct: 651 YVDKIPVGYRIMNAIFQNAATRSAGFTVVDLSQIAP 686
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 64 FRYDLGS-GSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPA 228
FRYD S V S P A IDI+I + + K++++ S RLDRPA
Sbjct: 151 FRYDPSSIRFHDVTEISLSPESAKVGIDIRI--IGNDAGEKLSILSSTLARLDRPA 204
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 334 LNASAEAALTPALGFTTTVESSTPPTKSESRT 239
+NA+A + PA+ T V S P T + S T
Sbjct: 106 MNAAAFVPMMPAVNLTNQVAFSAPQTTASSNT 137
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +1
Query: 82 SGSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPAESSRFETP 252
+ S PV T RP P W D+ + + + S+ V + E + +E+ F TP
Sbjct: 170 TNSPPVYHTVLRPTPETLWQDLCLLSESFANSLSDEAVLTLESNILLASEAPLFLTP 226
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 117 PVTCKHHGSASGSEVVTELKSSISNGQ 37
PVT + + +VVTEL+S +NG+
Sbjct: 450 PVTLAENAGLNAIQVVTELRSRHANGE 476
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 25.4 bits (53), Expect = 5.9
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 252 DFVGGVDDSTVVVNPNAGVRAASADALRMSY*TATPST*THRLSRRTFKSATRMTAAI 425
DF G DST+ + +G +S A S TATPS+ + S + S+T ++++I
Sbjct: 116 DFEGS--DSTLAASTISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSI 171
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +2
Query: 326 CIKDVVLNSNAVDINSSIKSSNIQECNTYDRGDIQASES 442
C K+++L + VD + ++ TY G +++ ES
Sbjct: 511 CTKNIILPNKHVDASQKFFDGHLLASETYVGGHVESLES 549
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 344 LNSNAVDINSSIKSSNIQECNTYDRGDIQASESCQCENG 460
+NSN I SSI SNI + Y + +S S Q +G
Sbjct: 226 VNSNHSSIPSSITKSNISSLDVYGSEKLISSGSQQPGHG 264
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 443 CQCENGGSCSTESTNC 490
C E G CSTE T+C
Sbjct: 256 CSQEKKGCCSTEKTSC 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,699
Number of Sequences: 5004
Number of extensions: 43069
Number of successful extensions: 149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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