Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30129
(566 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0172 - 1383568-1384440,1385336-1385401,1385470-1385505,138... 30 1.1
04_01_0179 + 2021977-2024890,2025117-2025610 29 2.6
10_01_0006 + 74000-76441 29 3.4
01_05_0622 + 23766226-23766835,23767025-23767356,23767516-23767626 29 3.4
12_01_0173 - 1292164-1293036,1294063-1294098,1294195-1294334,129... 28 4.5
08_01_0303 + 2493388-2493954 28 4.5
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592 28 6.0
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 28 6.0
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 28 6.0
03_04_0208 + 18575517-18575597,18575655-18576194 28 6.0
02_03_0294 - 17378157-17378208,17378433-17378512,17378594-173787... 28 6.0
01_06_0154 - 27049218-27049517,27049679-27050107 28 6.0
03_06_0599 + 34984869-34985319,34986581-34987563 27 7.9
>11_01_0172 -
1383568-1384440,1385336-1385401,1385470-1385505,
1385604-1385743,1386978-1387134,1387245-1387418,
1387540-1387790,1390296-1390446
Length = 615
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 304 PALGFTTTVESSTPPTKSESRTGSFQPVYP 215
P +G T + + PPT++ TGSF P P
Sbjct: 482 PQIGATAALGGTQPPTQANQATGSFPPPPP 511
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 340 DILNASAEAALTP--ALGFTTTVESSTPPTKSESRTGSFQPVYPNVSRS 200
D+L S AA +P A T+ SSTPP+ S S +GS +Y + S++
Sbjct: 1083 DLLLKSGAAAASPPRAAAAATSTSSSTPPS-SSSFSGSSAMIYNSSSKA 1130
>10_01_0006 + 74000-76441
Length = 813
Score = 28.7 bits (61), Expect = 3.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +2
Query: 476 ESTNCICPPGYR 511
++T C+CPPGYR
Sbjct: 290 DNTTCVCPPGYR 301
>01_05_0622 + 23766226-23766835,23767025-23767356,23767516-23767626
Length = 350
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 58 LEFRYDLGSGSTPVVLTSDRPLPANQWIDIQIARLADSVSMKINLVRSFERRLDRPAE 231
L+ RY+L SGS PV LT L +++D+ R++ S+ + +++ + D P E
Sbjct: 156 LQLRYNLFSGSIPVQLTK---LENLRYLDLAYNRISGSIPPTLGGLKAMIQGGDIPEE 210
>12_01_0173 -
1292164-1293036,1294063-1294098,1294195-1294334,
1295592-1295748,1295862-1296035,1296146-1296396,
1299446-1299590
Length = 591
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 304 PALGFTTTVESSTPPTKSESRTGSFQPVYP 215
P +G T + + PPT++ GSF P P
Sbjct: 458 PQIGATAALGGTQPPTQANQAAGSFPPPPP 487
>08_01_0303 + 2493388-2493954
Length = 188
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 372 HRLSRRTFKSATRMTAAIFRRRSPA 446
HR SRR S T A+ RRRSPA
Sbjct: 29 HRCSRRRRPSPLTTTVALTRRRSPA 53
>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
Length = 371
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 304 PALGFTTTVESSTPPTKSESRTGSFQPVYPN 212
P LGF ++ T P S RT SF+P+ P+
Sbjct: 68 PILGFFCEEKALTGPFSSFVRTTSFRPIIPD 98
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -2
Query: 358 GVAVQYDILNASAEAALTP---ALGFTTTVESSTPPTKSES-RTGSFQPVYPNVSRSCVL 191
G V + N +AE TP +L T + ++ P T +++ + + P N+ C +
Sbjct: 98 GEHVAVAVNNVAAETQSTPDDISLPSTNSSAAAVPTTTNKAEQQQTGDPGANNMEEKCDM 157
Query: 190 S*SSWRRNPRG 158
S W R P+G
Sbjct: 158 SMGKWVREPKG 168
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/56 (28%), Positives = 21/56 (37%)
Frame = +3
Query: 378 LSRRTFKSATRMTAAIFRRRSPANAKTXVPVRLNPPTAYAHPATGIVLRDAHCILP 545
L F AA+ P + + PV+L P T A P G D H +P
Sbjct: 364 LVEHVFGIVKEHVAAVAADAEPQSPEAKTPVKLGPVTDQAVPVLGDKNDDGHADMP 419
>03_04_0208 + 18575517-18575597,18575655-18576194
Length = 206
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 322 AEAALTPALGFTTTVESSTPPTKSESRTGSFQPVYPNVSRSC 197
+E LT A+G TTT + P + +SRT + + S +C
Sbjct: 110 SELDLTLAIGRTTTTKKEAPSSSVDSRTSNSSSSTESGSTNC 151
>02_03_0294 -
17378157-17378208,17378433-17378512,17378594-17378764,
17379836-17379940,17381251-17381307
Length = 154
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -3
Query: 183 LH-GDGIREAGDLNVDPLVRGQWPVTCKHHGSA 88
LH GDG + GD ++R WP C G+A
Sbjct: 74 LHMGDGDKAYGDAYTCRMMRPDWPKACYRQGAA 106
>01_06_0154 - 27049218-27049517,27049679-27050107
Length = 242
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 274 SSTPPTKSESRTGSFQPVYPNVSRSC-VLS*SSWRRNPRGGRSECRSIGSR 125
++ P T+ G+ P +C S WR PRG +S C + G R
Sbjct: 102 AAAPRTEPSGGAGAAAASAPRRCANCDTTSTPLWRNGPRGPKSLCNACGIR 152
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +1
Query: 7 SSRGYGGFTSLTVRNGRLEFRYDLGSGSTPVVLTSDRPLPA 129
S+ G F L G L + GSG+TPV +S P PA
Sbjct: 299 SAAADGAFKLLQEAWGELSLLHPPGSGATPVSWSSPPPPPA 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,867
Number of Sequences: 37544
Number of extensions: 363289
Number of successful extensions: 1238
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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