Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30129
         (566 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    30   0.94 
At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /...    29   2.2  
At3g15353.1 68416.m01944 metallothionein protein, putative             28   3.8  
At4g35670.1 68417.m05064 glycoside hydrolase family 28 protein /...    28   5.0  
At1g17210.1 68414.m02097 expressed protein distantly related to ...    28   5.0  
At1g21240.1 68414.m02654 wall-associated kinase, putative simila...    27   6.6  
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila...    27   6.6  
At4g38400.1 68417.m05428 expansin family protein (EXPL2) contain...    27   8.7  
At3g47580.1 68416.m05180 leucine-rich repeat transmembrane prote...    27   8.7  
At3g45910.1 68416.m04968 hypothetical protein                          27   8.7  
At2g34350.1 68415.m04204 nodulin-related weak similarity to nodu...    27   8.7  
At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N domain-...    27   8.7  
At1g56120.1 68414.m06444 leucine-rich repeat family protein / pr...    27   8.7  

>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 338 VVLNSNAVDINS-SIKSSNIQECNTYDRGDIQASESCQCENGGSCSTESTNCICPPGY 508
           V+   N   +NS S K++   + +TY+   I+   SC C N     T+  NC C  GY
Sbjct: 273 VIQTKNLSFVNSLSCKNTKEYDNSTYN---IKLVTSCICNNVTISGTDYANCGCSQGY 327


>At4g32375.1 68417.m04610 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Lycopersicon esculentum] GI:4325090;
           contains Pfam profile PF00295: Polygalacturonase
           (pectinase)
          Length = 486

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 NSNAVDINSSIKSSNIQECNTYDRGDIQASESCQCENGGSCSTESTNCICPPGY 508
           N++ +DI     S+NI+  N+     IQ  + C   NGGS     T+  C PG+
Sbjct: 157 NTDGIDI---AHSNNIRIFNS----SIQTGDDCIAINGGSYDINITHVACGPGH 203


>At3g15353.1 68416.m01944 metallothionein protein, putative
          Length = 69

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 395 QECNTYDRGDIQASESCQCENGGSCSTESTNCICPP 502
           +E    D G  + + +C+C+ G SCS    NC C P
Sbjct: 35  KEAMIMDVGAEENNANCKCKCGSSCS--CVNCTCCP 68


>At4g35670.1 68417.m05064 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 [Vitis vinifera] GI:15081600;
           contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 394

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 347 NSNAVDINSSIKSSNIQECNTYDRGDIQASESCQCENGGSCSTESTNCICPPGY 508
           N++ +DI+ S   +NI   N +D   IQ  + C   N GS +   T   C PG+
Sbjct: 193 NTDGIDISDS---TNI---NIFD-STIQTGDDCIAINSGSSNINITGINCGPGH 239


>At1g17210.1 68414.m02097 expressed protein distantly related to
           dentin phosphoryn [Homo sapiens] (GI:4322670)
          Length = 958

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 338 VVLNSNAVDINSSIKSSNIQECNTYDRGDI 427
           V++N+ +VD      + +++ C T+DRGD+
Sbjct: 60  VLVNAGSVDWTGHGLALSVRSCRTWDRGDL 89


>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 741

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 341 VLNSNAVDINSSIKSSNIQECNTYDRGDIQASESCQCENGGSCSTESTNCICPPGYRDR 517
           +   N+   NS+ ++  I +CN    G+   SE   C++   C +++ NC  P   R+R
Sbjct: 257 ICGKNSSCYNSTTRNGYICKCNEGYDGNPYRSEG--CKDIDECISDTHNCSDPKTCRNR 313


>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
           to receptor-like protein kinase [Arabidopsis thaliana]
           gi|4008008|gb|AAC95352; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 840

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 464 SCSTESTNCICPPGYRDRTAR 526
           S STE   C C PGY  +T R
Sbjct: 301 STSTEKFECSCLPGYEPKTPR 321


>At4g38400.1 68417.m05428 expansin family protein (EXPL2) contains
           Pfam profile: PF01357 pollen allergen; expansin-like
           gene, PMID:11641069, www.bio.psu.edu/expansins
          Length = 265

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 43  VRNGRLEFRYDLGSGSTPVVLTSDRPLPAN 132
           V NG L+FR+ + +G    ++ S R LPAN
Sbjct: 206 VPNGALQFRFVVTAGYDGKMVWSQRVLPAN 235


>At3g47580.1 68416.m05180 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1011

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +1

Query: 16  GYGGFTSLTVRNGRLEFRYDLGSGSTPVVLTSDRPLPANQW 138
           G  GFT  T R   LEF+  +  G   V+ + +   P   W
Sbjct: 16  GADGFTDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNW 56


>At3g45910.1 68416.m04968 hypothetical protein 
          Length = 200

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 292 FTTTVESSTPPTKSESRTGSFQPVYPNVSRSCVLS*SSWRRNP 164
           F   V  S PPTK++ R+ + +  +P++     +   +  RNP
Sbjct: 98  FGVEVHISQPPTKTKKRSNANRKGFPDIELGKAMHSRALERNP 140


>At2g34350.1 68415.m04204 nodulin-related weak similarity to
           nodule-specific protein Nlj70 [Lotus japonicus]
           GI:3329366
          Length = 525

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 140 IHWFAGNGLSLVSTTGVLPDP 78
           + WF G G   ++T+GV+P P
Sbjct: 92  LQWFVGYGFIWMATSGVIPRP 112


>At2g26920.1 68415.m03229 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 646

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +2

Query: 371 SSIKSSNIQECNTYDRGDIQASESCQCENGGSCSTES 481
           +SI         + D  D+   ES    N GSCS ES
Sbjct: 61  ASISPLQYSRFRSIDEADVNGIESDSVSNNGSCSGES 97


>At1g56120.1 68414.m06444 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 316 AALTPALGFTTTVESSTPPTKSESRTGSFQPVYPNV 209
           AA++    FT TV ++ PP+K +SRTG+   V   V
Sbjct: 625 AAVSATPDFTPTV-ANRPPSKGKSRTGTIVGVIVGV 659


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,518,846
Number of Sequences: 28952
Number of extensions: 249234
Number of successful extensions: 805
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)