Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30128
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    29   0.73 
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    28   1.3  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    27   2.9  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    26   5.1  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   6.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   9.0  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 378 PFGLAINGDKLYWSDWRTLKIEIIDTITQARGQIDIP 488
           P  L  NGD   W DW     + +DT+  ARG +  P
Sbjct: 454 PLSLIGNGDCYSWQDWYDGVNKGVDTVMIARGALVKP 490


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = -3

Query: 497 RRSWNVYLPSRLGY-CVYDFDFQCSPIAPVQFVSVDGEAEGVPAVLRNSLDLPTV*VNAL 321
           ++ + +  P R+    VY+++     +A  +F +   +A G+       +DL  V + ++
Sbjct: 127 KKLYQITTPERMMQNLVYEYEM----LALKRFPACSRKAGGLIETSCTIMDLKGVGITSI 182

Query: 320 NDLEARVREANSISRPVDGHRVGSF 246
           + + + +R+A+SIS+     R+G F
Sbjct: 183 HSVYSYIRQASSISQDYYPERMGKF 207


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 367 FSAIVSICRLCRSMHLMTWRP-ASAKQTRSLDQSMATELE 251
           F     +C  C S++L+ WR       T    + MA+E+E
Sbjct: 95  FQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMASEVE 134


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 122  PLGLEMFCTENKTFLTFVSKLATSIVSFLESVQNMFL 12
            P  L+ FC+E    +T +SK    +V++  S+ N+F+
Sbjct: 1311 PSLLDFFCSEFVPKITELSKEEDKLVAWATSIVNVFI 1347


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -1

Query: 382 KGYLQFS-AIVSICRLCRSMHLMTWRPASAKQTRSLDQSMATELEAS 245
           K ++QFS ++ S+ R C+S   M  + ASAK + S+ +     ++ S
Sbjct: 11  KLFIQFSYSLTSVFRKCQSRTFMNSQFASAKLSNSIKKYFDGRIDES 57


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = -3

Query: 503  PYRRSWNVYLPSRLGYCVYDFDFQCSPIAPVQFVSVDGEAEGVPAVLRNSLDLP 342
            P+  + ++ +P++  +   D DF+ S I     +  DG  + V + +  + +LP
Sbjct: 865  PFHDTGSIKIPAKRSFDTIDKDFRSSNIPFADKIKEDGGDKNVISSIHITTELP 918


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 156 EDFPSLRMYGDAPRIRNVLYREQDFSNF 73
           E FP L++    P +RN+      FSNF
Sbjct: 155 EFFPILKLCSQLPSLRNLTLDSNLFSNF 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,081
Number of Sequences: 5004
Number of extensions: 56871
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)