Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30128
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0138 + 13325418-13325954                                         29   3.0  
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708     29   3.0  
06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089           29   4.0  
12_02_0403 - 18627246-18627557,18627904-18628836                       27   9.2  
10_08_0418 - 17779499-17780952,17781177-17782017                       27   9.2  
05_04_0280 - 19752112-19752451,19754104-19755587                       27   9.2  

>10_07_0138 + 13325418-13325954
          Length = 178

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -3

Query: 584 RRCSYRFSASKRWQPRDTRSARWQHL*PYRRSW 486
           RRCS R+  S+RW+ R +R  RW      RRSW
Sbjct: 85  RRCSRRWRRSRRWRSRCSR--RW------RRSW 109


>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
          Length = 2033

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 337  CRSMHLMTWRPASAKQTRSLDQSMATELE 251
            CR +H + WR +SA++   L++ M   +E
Sbjct: 1659 CRDVHHLPWRSSSARRELELEEGMDCSIE 1687


>06_01_0936 - 7220333-7220508,7221208-7221327,7221898-7223089
          Length = 495

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 336 HSRQIETIAENCRYPFGLAINGDKLY 413
           H + I T++ N  Y  GLA++GD LY
Sbjct: 23  HYQCIATLSGNSSYVSGLAVDGDSLY 48


>12_02_0403 - 18627246-18627557,18627904-18628836
          Length = 414

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 198 EHGRHGKISP-PR*PRCEASNSVAIDWSRDRVC-FADAGLQVIKCIDLHSRQIETIAENC 371
           EH R   ++P P   RC    S+A     D  C   D G ++   I +H R        C
Sbjct: 258 EHERVAAVAPLPAMSRCRLPVSMA---KEDACCQLTDVGGRLGVSIAIHQRN-----SIC 309

Query: 372 RYPFGLAINGDKLYWSDWRTLK 437
              + L   G K  WS WRT++
Sbjct: 310 IEVWLLEGRGGKQKWSKWRTIQ 331


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 317 DLEARVREANSISRPVDGHRVGSFTSGLPRRTDLSVPSMFAH 192
           + E R  E    ++ V GH V       PR  D+ VP+ +A+
Sbjct: 516 NFETRAYELRCRTQLVGGHEVWKPAESPPRAADMEVPAAYAN 557


>05_04_0280 - 19752112-19752451,19754104-19755587
          Length = 607

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -2

Query: 285 DLSTSRWPQSWKLHIWATEED*SFRAVHVR----PLDLRIASIP-VSPEDFPSL 139
           D + +RWP SW     A     SF A H+R    P+   I ++P V P+  P+L
Sbjct: 44  DPAAARWPSSWSP---AAPPLHSFAASHLREAVSPIAAAILALPGVDPDPLPAL 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,386,590
Number of Sequences: 37544
Number of extensions: 407664
Number of successful extensions: 1276
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)