Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30128
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55780.1 68418.m06952 DC1 domain-containing protein contains ...    31   0.47 
At3g61820.1 68416.m06939 aspartyl protease family protein contai...    31   0.83 
At3g14610.1 68416.m01850 cytochrome P450, putative similar to GB...    29   2.5  
At4g18790.1 68417.m02775 NRAMP metal ion transporter 5, putative...    29   3.3  
At3g56780.1 68416.m06315 F-box family protein contains F-box dom...    28   5.8  
At4g25160.1 68417.m03622 protein kinase family protein contains ...    27   7.7  

>At5g55780.1 68418.m06952 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 685

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 369 CRYPFGLAINGDKLYWSDWRTLKIE 443
           CR PF +   GDKL +  W  LKIE
Sbjct: 651 CRCPFPIFYKGDKLIFCSWYCLKIE 675


>At3g61820.1 68416.m06939 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 483

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = -2

Query: 279 STSRWPQSWKLHIWATEED*SFRAVHVRPLDLRIASIPVSPEDFPSLRMYGDAPRIRNV 103
           +T  WP+S  L   +  E  +  +VH+  +D   +    SP D  +LR+  D+ R++++
Sbjct: 39  ATLSWPESESLTDESLSESTTSLSVHLSHVDALSSFSDASPADLFNLRLQRDSLRVKSI 97


>At3g14610.1 68416.m01850 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 512

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 125 MPLGLEMFCTENKTFLTFVSKLATSIVSFLESVQNMF 15
           +PL L+M  +  KTF  ++  L T +++  E ++ +F
Sbjct: 81  LPLALKMLNSHGKTFFIWIGPLPTIVITNPEQIKEVF 117


>At4g18790.1 68417.m02775 NRAMP metal ion transporter 5, putative
           (NRAMP5) identical to heavy metal transporter
           [Arabidopsis thaliana]gi|12657269|emb|CAC27822; similar
           to metal transporter Nramp3 [Arabidopsis thaliana]
           gi|6468012|gb|AAF13278; member of the natural
           resistance-associated macrophage protein (NRAMP) metal
           transporter family, PMID:11500563
          Length = 530

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/77 (20%), Positives = 36/77 (46%)
 Frame = -1

Query: 499 IVDLGMSICPLAWVIVSMISIFNVLQSLQYNLSPLMARPKGYLQFSAIVSICRLCRSMHL 320
           +  +G S+  LAW +   + + N    L + ++ +     G+L F  +V        ++L
Sbjct: 448 VFKIGPSLEKLAWTVAVFVMMINGYLLLDFFMAEVEGFLVGFLVFGGVVGYISFI--IYL 505

Query: 319 MTWRPASAKQTRSLDQS 269
           +++R + +    SL+ S
Sbjct: 506 VSYRSSQSSSWSSLEMS 522


>At3g56780.1 68416.m06315 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 431

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = -1

Query: 562 LRANVGSPGTLARRVGNTYNRIVDLGMSICPLAWV--IVSMISIFNVLQSLQYNLSPLMA 389
           +R  +G P  L     +T++RIV L +SIC    V  +V ++  F  L  L+     L+ 
Sbjct: 330 VRVRLGVPSKLED--ASTFSRIVHLELSICSERSVEMLVDLLLCFTKLVVLKLEHVYLLT 387

Query: 388 RPKGYLQFSAIVSICRLCRSMHLMTWR 308
            P G  +  ++V  C L  S+  + W+
Sbjct: 388 -PLGRWEPPSLVPEC-LLSSLEALEWK 412


>At4g25160.1 68417.m03622 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 835

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 279 STSRWPQSWKLHIWATEED*SFRAVHVRPLDLRIASIP 166
           S S++  +W +  +ATE +  F+ +H+ P+   I S+P
Sbjct: 30  SKSKYVVTWAIEKFATEGNVGFKLLHIHPM---ITSVP 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,426,602
Number of Sequences: 28952
Number of extensions: 310677
Number of successful extensions: 978
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)