Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30127
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 109 3e-25
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 108 6e-25
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 4.2
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi... 25 7.3
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.3
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 25 9.7
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 25 9.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 109 bits (262), Expect = 3e-25
Identities = 55/88 (62%), Positives = 65/88 (73%)
Frame = +2
Query: 242 ACRRGTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 421
AC R T S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +
Sbjct: 66 ACIR-TAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVI 124
Query: 422 KMAPGVTVVNSPKQKDELIIEGNSLEDV 505
K PGVTV S KDE+IIEGNSLE+V
Sbjct: 125 KCLPGVTVSISSAVKDEIIIEGNSLENV 152
Score = 59.3 bits (137), Expect = 5e-10
Identities = 26/67 (38%), Positives = 45/67 (67%)
Frame = +3
Query: 54 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 233
+ I ++ + IP+G++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKK-QGNTIKFIVWHGS 61
Query: 234 KKELAAV 254
+K A +
Sbjct: 62 RKHNACI 68
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 603
SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 155 SAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 108 bits (260), Expect = 6e-25
Identities = 54/88 (61%), Positives = 66/88 (75%)
Frame = +2
Query: 242 ACRRGTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 421
AC R +V S + NMI GVT+GF+YKMR VYAHFPIN TE +++EIRNFLGE+ R +
Sbjct: 66 ACIR-SVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVI 124
Query: 422 KMAPGVTVVNSPKQKDELIIEGNSLEDV 505
K PGVTV S KDE+I+EGNSLE+V
Sbjct: 125 KCLPGVTVSISSAVKDEIILEGNSLENV 152
Score = 55.6 bits (128), Expect = 6e-09
Identities = 25/67 (37%), Positives = 42/67 (62%)
Frame = +3
Query: 54 KQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGS 233
+ I ++ + IP G+TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKK-QGNTIKFIVWHGS 61
Query: 234 KKELAAV 254
+K A +
Sbjct: 62 RKHNACI 68
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 603
SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 155 SAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -1
Query: 606 HNSCFLRYIKTIQELSDILILDCSRLLDESSRAETSSKELPS 481
H S L Y KT++E++ + I+D + +E + T + S
Sbjct: 796 HQSSLLPYFKTLKEIAHLFIID-GKNAEEIGKLATDTSRFSS 836
>SPAC1B3.02c |||transcription elongation factor, Elf1
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 107
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 232 PKRSLPPWDSLFTC 273
PKR PP D+ FTC
Sbjct: 12 PKRRAPPLDTTFTC 25
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 247 ASSFLDPNHFSTFRRRGFTMRMSTAKC-LKFLLRTPRG 137
A SFL+P STF R F+ +S C + LR+P G
Sbjct: 341 AQSFLEPQTRSTFLRYLFSDEVSVKVCHVLKELRSPTG 378
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -1
Query: 567 ELSDILILDCSRLLDESSRAETSSKELPSMISS 469
+ D+ ++ + L+DE ++ T + +PS I S
Sbjct: 503 QFRDVKVIQVAMLMDEIAQVATKFRNMPSKIPS 535
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 20 FRLLCQTKPKHEANCSKSESQNPRRA 97
F +LC + K + C K + +NP A
Sbjct: 25 FLILCMRRNKRQLACMKCQCENPMAA 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,653
Number of Sequences: 5004
Number of extensions: 57183
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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