Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30127
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044 113 1e-25
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17... 113 1e-25
02_01_0212 + 1412202-1412418,1412789-1412853,1413015-1413063,141... 28 5.7
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 28 5.7
07_03_0630 - 20097672-20097772,20097983-20102012 28 7.6
05_03_0364 + 13007002-13007538,13007965-13008393,13008649-130089... 28 7.6
04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031 28 7.6
04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822 28 7.6
>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
Length = 190
Score = 113 bits (272), Expect = 1e-25
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +2
Query: 257 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 436
T SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M G
Sbjct: 71 TAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEG 130
Query: 437 VTVVNSPKQKDELIIEGNSLE 499
VT++ S K KDEL+++GN +E
Sbjct: 131 VTILRSEKVKDELVLDGNDIE 151
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/73 (45%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +3
Query: 51 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV-NPRLLKVEKWF 227
MK I+A++ ++IP+G+TV V +++VTV+GPRG L RNFKHL +D +++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 228 GSKKELAAVGQSV 266
G+++ +AA+ ++
Sbjct: 61 GTRRTMAAIRTAI 73
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 612
SAALI Q VKNKDIRKFLDG+YVS+K T+ D
Sbjct: 156 SAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189
>02_01_0029 -
176002-176137,176495-176646,177166-177577,178010-178126,
178260-178322,178964-179167,180605-180687,182394-182516,
182987-183328
Length = 543
Score = 113 bits (272), Expect = 1e-25
Identities = 50/81 (61%), Positives = 63/81 (77%)
Frame = +2
Query: 257 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 436
T SHV+N+I GVTKG++YKMR VYAHFPIN T N+ IEIRNFLGEK +R+V M G
Sbjct: 64 TAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEG 123
Query: 437 VTVVNSPKQKDELIIEGNSLE 499
VT++ S K KDEL+++GN +E
Sbjct: 124 VTILRSEKVKDELVLDGNDIE 144
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/66 (45%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Frame = +3
Query: 78 VKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMV---NPRLLKVEKWFGSKKELA 248
++IP G+TVHV +++VTV+GPRG L RNFKHL +D +++ R L+V+ WFG+++ +A
Sbjct: 1 MEIPSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMA 60
Query: 249 AVGQSV 266
A+ ++
Sbjct: 61 AIRTAI 66
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +1
Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 612
SAALI Q VKNKDIRKFLDG+YVS+K T+ D
Sbjct: 149 SAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182
>02_01_0212 +
1412202-1412418,1412789-1412853,1413015-1413063,
1413775-1413869,1414024-1414109,1414185-1414244,
1414322-1414403,1415228-1415341,1415444-1415608
Length = 310
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 484 RQLFGRCLCSAALIQQSTTVKNKD 555
R LFG CLCS+A I Q T +NK+
Sbjct: 249 RALFGVCLCSSA-INQLTKGRNKE 271
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 6 SKRSFSGSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRN 161
S++SF S + P ++ +P G T H +S + V+GPRG + N
Sbjct: 39 SRQSFLPSSTARWPRFPPVLG----PLPRGATSHRESGISAVRGPRGRIGEN 86
>07_03_0630 - 20097672-20097772,20097983-20102012
Length = 1376
Score = 27.9 bits (59), Expect = 7.6
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Frame = -1
Query: 573 IQELSDILILDCSRLL-DESSRAETSSKELPSMIS------SSFCFGELTTVTPGAIFTL 415
I+ L +ILI+DCS ++ D + + K+ P+ I + G T G F +
Sbjct: 1017 IKNLKNILIIDCSTVVTDSNEESAQEDKQSPTQIDRTMHSLTHLTLGGDTMQKVGLEFVI 1076
Query: 414 LMYFSPKKLRISIIELPSVVTQ 349
S + LR+ I++ + +T+
Sbjct: 1077 PQTPSLRNLRLDIVQGHTSITK 1098
>05_03_0364 +
13007002-13007538,13007965-13008393,13008649-13008990,
13009904-13010035,13010432-13010596
Length = 534
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 288 LIMFSTCEQTVPRRQAPFWIRTISQP 211
+++F TC VP P WIR P
Sbjct: 179 MLLFLTCPSKVPLEVVPIWIRIYDLP 204
>04_01_0552 + 7125735-7126424,7126473-7126911,7127694-7128031
Length = 488
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 256 PTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTP 143
PT S +LD + + GF + ST+ CL +L P
Sbjct: 264 PTVPSFYLDDDRLQPNKNYGFNISDSTSPCLAWLDNQP 301
>04_01_0546 + 7091058-7091508,7092221-7092542,7092783-7092822
Length = 270
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 256 PTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTP 143
PT S +LD + + GF + ST+ CL +L P
Sbjct: 38 PTVPSFYLDDDRLQPNKNYGFNISDSTSPCLAWLDNQP 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,478,833
Number of Sequences: 37544
Number of extensions: 365287
Number of successful extensions: 794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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