Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30127
(660 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 94 8e-20
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08) 30 1.5
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 29 4.4
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 5.9
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.9
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 7.7
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 7.7
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 94.3 bits (224), Expect = 8e-20
Identities = 40/64 (62%), Positives = 52/64 (81%)
Frame = +2
Query: 242 ACRRGTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRV 421
AC + T+ +H+ENMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV
Sbjct: 622 ACVK-TIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRV 680
Query: 422 KMAP 433
+M P
Sbjct: 681 RMRP 684
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/77 (51%), Positives = 54/77 (70%)
Frame = +3
Query: 24 GSCVKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPR 203
GSC+ MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V
Sbjct: 548 GSCLSCIVAMKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKD 607
Query: 204 LLKVEKWFGSKKELAAV 254
++V+ WF S+KELA V
Sbjct: 608 KVRVDVWFASRKELACV 624
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 58.4 bits (135), Expect = 5e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +1
Query: 517 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 606
ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08)
Length = 343
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = -1
Query: 369 LPSVVTQLMGK*AYTARILYWKPLVTPLIMFSTCEQTVPRRQAPFWIRTISQPSGDEG-- 196
LPS V++++ T+ + + P ++ +CE T+P+ + + Q GD+G
Sbjct: 239 LPSPVSEML---VATSPVQPCPEVDEPAVIARSCESTLPKPEPESPAKPPEQRVGDDGEV 295
Query: 195 LPCECQ 178
PC CQ
Sbjct: 296 APCNCQ 301
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 81 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKVEKWFGSKKELA 248
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV E+
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKVHVLCKDNSEMQ 63
Query: 249 AVGQS 263
V S
Sbjct: 64 YVVHS 68
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 212 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 120
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 573 WSLCI*ENNCCAR*HIKH 626
WS+C NCCAR H H
Sbjct: 919 WSVCTRPQNCCARLHKSH 936
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 33 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 146
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +2
Query: 59 NCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLGC*HSHGKPSSPEG*EMVRIQK 238
NC + + + + P + + R + + T GC H HGK P G E+ R
Sbjct: 628 NCKTTARRTTKPSKEPAIPTTKPIPKRDRVTPEPTTTPGC-HYHGK-WYPPGSEISRSSY 685
Query: 239 GACRRGTVC 265
G C G C
Sbjct: 686 GGCESGLTC 694
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +2
Query: 59 NCSKSESQNPRRAYGPCEIASGDS*RAPRSSQKELQTLGC*HSHGKPSSPEG*EMVRIQK 238
NC + + + + P + + R + + T GC H HGK P G E+ R
Sbjct: 993 NCKTTARRTTKPSKEPAIPTTKPIPKRDRVTPEPTTTPGC-HYHGK-WYPPGSEISRSSY 1050
Query: 239 GACRRGTVC 265
G C G C
Sbjct: 1051 GGCESGLTC 1059
>SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 363 SVVTQLMGK*AYTARILYWKPLVTPLIMFSTCEQTVPRRQAPFWIRTI 220
S VT L+GK + + L+ + + E T P P WIRT+
Sbjct: 185 SDVTPLIGKFFVASMVEIGLALIATCFVLNIYESTGPSEDVPNWIRTL 232
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -2
Query: 203 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 93
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 65 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 172
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 489 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 370
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 108 VKSRLVTVKGPRGVLKRNFKHL 173
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,661,906
Number of Sequences: 59808
Number of extensions: 435281
Number of successful extensions: 1146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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