Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30127
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal pro...   117   9e-27
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical p...    27   8.9  
Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical...    27   8.9  

>AC006679-6|AAK84469.1|  189|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 9 protein.
          Length = 189

 Score =  117 bits (281), Expect = 9e-27
 Identities = 55/94 (58%), Positives = 69/94 (73%)
 Frame = +2

Query: 224 VRIQKGACRRGTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGE 403
           VR +  A R  TVCSH++NMIKGVT GF+YKMR+VYAHFPIN    +GN  +EIRNFLGE
Sbjct: 61  VRKELAAIR--TVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGE 118

Query: 404 KYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDV 505
           K +RRV +  GV    S  QKDE+++EGN ++ V
Sbjct: 119 KIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFV 152



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 31/68 (45%), Positives = 48/68 (70%)
 Frame = +3

Query: 51  MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 230
           MK I +N  V  P+G+T  VK+R+V V GPRG ++++F+HL +++  +    L+V KWFG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 231 SKKELAAV 254
            +KELAA+
Sbjct: 61  VRKELAAI 68



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 27/35 (77%), Positives = 30/35 (85%)
 Frame = +1

Query: 511 SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 615
           +AA IQQST VK KDIRKFLDG+YVSEKTT+V  D
Sbjct: 155 AAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
            protein D1007.15 protein.
          Length = 1184

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +2

Query: 293  VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 430
            ++  F Y + +++  FPI C+  +   I+ +   +G  Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130


>Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical
           protein T23G11.6a protein.
          Length = 653

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = -1

Query: 606 HNSCFLRYIKTIQELSDILILDCSRLLDESSRAETSSKELPSMISSSFCFGELTTVTPGA 427
           HN      ++ I  L  +  LD SR        ET  KE+P +         + T+ PG 
Sbjct: 216 HNFINETVVEEIGRLKALKTLDLSRADGIFQPPETLFKEIPQIEVLKLSGCSIPTLEPGQ 275

Query: 426 IFTLLMYFSPKKLRISIIE 370
            F  L       LR+++IE
Sbjct: 276 -FATLKKLKELDLRVNLIE 293


>Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical
           protein T23G11.6b protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/79 (27%), Positives = 32/79 (40%)
 Frame = -1

Query: 606 HNSCFLRYIKTIQELSDILILDCSRLLDESSRAETSSKELPSMISSSFCFGELTTVTPGA 427
           HN      ++ I  L  +  LD SR        ET  KE+P +         + T+ PG 
Sbjct: 216 HNFINETVVEEIGRLKALKTLDLSRADGIFQPPETLFKEIPQIEVLKLSGCSIPTLEPGQ 275

Query: 426 IFTLLMYFSPKKLRISIIE 370
            F  L       LR+++IE
Sbjct: 276 -FATLKKLKELDLRVNLIE 293


>Z72509-1|CAA96645.1|  339|Caenorhabditis elegans Hypothetical
           protein F32G8.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 337 VSIHSTHLVLE----AFSYSFNHVLYM*TDCPTAASSFL 233
           + I+  HL+LE     F  +F  VLYM    PTA  +F+
Sbjct: 260 IPIYIAHLILENYDLPFLSNFEKVLYMMLSLPTAIDAFI 298


>Z68317-2|CAA92690.2|  980|Caenorhabditis elegans Hypothetical
           protein T01H3.2 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 433 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 299
           RC L   ++F +  +T LNN + + GD +++  +   S   VL  F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522


>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
           protein M110.4b protein.
          Length = 1155

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 179 NSQVFEVPFENSAGPFNCHQTRFHMDR 99
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
           protein M110.4a protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 179 NSQVFEVPFENSAGPFNCHQTRFHMDR 99
           +SQ F +PF N++GP N +  R  M++
Sbjct: 26  SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52


>AL132860-13|CAB60509.1|  292|Caenorhabditis elegans Hypothetical
           protein Y56A3A.15 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 615 VI*HNSCFLRYIKTIQELSDILILDCSR 532
           ++ HN  +L + KT   L DIL+ +CS+
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSK 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,298,967
Number of Sequences: 27780
Number of extensions: 327601
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)