Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30125
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 148 2e-36
08_02_0478 + 17621678-17623768 29 1.5
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 1.9
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 1.9
08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187 28 4.5
08_01_0346 - 3063440-3064189 28 4.5
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 4.5
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 4.5
01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411 28 4.5
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 5.9
05_03_0039 - 7621613-7622695 27 7.8
04_01_0360 - 4720997-4721812 27 7.8
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 148 bits (359), Expect = 2e-36
Identities = 70/87 (80%), Positives = 78/87 (89%)
Frame = +3
Query: 3 QAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 182
QAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI S
Sbjct: 103 QAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS 162
Query: 183 GDPCNDYVNTATRHVLLRQGVLGIRSK 263
G P N Y+++A RHVLLRQGVLGI+ K
Sbjct: 163 GYPVNLYIDSAVRHVLLRQGVLGIKVK 189
Score = 45.6 bits (103), Expect = 2e-05
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 254 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 379
+VKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
>08_02_0478 + 17621678-17623768
Length = 696
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 153 KFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIRSKS 266
K + GL+IHSG ND+V+++ + + G++ KS
Sbjct: 421 KQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKS 458
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/76 (21%), Positives = 35/76 (46%)
Frame = -2
Query: 245 YSLPEKHMSGSSVDVIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 66
+ L + + GS +++ V R D +++Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 65 TIASTTYSETSDKLVS 18
I ++ +S
Sbjct: 799 VIGQGDQDSEKNRYLS 814
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 156 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 52
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>08_02_1338 - 26244928-26245159,26246420-26247374,26247921-26249187
Length = 817
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 424 DSGDRLRQRRGREGAHFAGRLEGHGLVLG 338
+ GD+ + +G EG +G GHG V+G
Sbjct: 164 EEGDKGMKVKGEEGCRASGSDSGHGCVIG 192
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 6 AESLRYKLIGGLAVRRACYGVLR 74
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 336 SVTRMWSGCGFFGPFLPCWSH 274
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/63 (23%), Positives = 30/63 (47%)
Frame = +3
Query: 42 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATR 221
A R A G++ + + G G SG+ RGQ +++ ++G + +Y++ A
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531
Query: 222 HVL 230
+L
Sbjct: 532 EIL 534
>01_01_0213 + 1833221-1835062,1835429-1835558,1835726-1836411
Length = 885
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 299 PKKPQPDHILVTEPKDEPVPLEPTS 373
P+ +PD +LV P P PL P +
Sbjct: 129 PRADEPDVVLVLPPSQRPPPLSPAA 153
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 186 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 91
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>05_03_0039 - 7621613-7622695
Length = 360
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 272 PWDQQGKNGPK-KPQPDHILVTEPKDEPVPLEP 367
P + + K PK KP P H EPK EP P EP
Sbjct: 53 PPELEPKPKPKPKPHPKHESKPEPKPEPKP-EP 84
>04_01_0360 - 4720997-4721812
Length = 271
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 424 DSGDRLRQRRGREGAHFAGRLEGHGL 347
D G R RQR G G A R +G GL
Sbjct: 168 DGGRRRRQRDGEAGVEAAARGDGDGL 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,771
Number of Sequences: 37544
Number of extensions: 265678
Number of successful extensions: 946
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -