Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30125
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 158 2e-39
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 38 0.003
SB_9209| Best HMM Match : Pyocin_S (HMM E-Value=1.8) 32 0.28
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027) 30 0.85
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 30 0.85
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 30 0.85
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 29 2.0
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 2.0
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 2.6
SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02) 28 3.4
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2) 28 4.5
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 4.5
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 28 4.5
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 28 4.5
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 28 4.5
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047) 28 4.5
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 27 6.0
SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043) 27 6.0
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 158 bits (383), Expect = 2e-39
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = +3
Query: 3 QAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 182
Q ESLRYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+
Sbjct: 101 QCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHA 160
Query: 183 GDPCNDYVNTATRHVLLRQGVLGIRSK 263
G+P YV+TA RHV LRQGVLGI+ K
Sbjct: 161 GEPTTHYVDTAVRHVYLRQGVLGIKVK 187
Score = 68.5 bits (160), Expect = 3e-12
Identities = 28/41 (68%), Positives = 32/41 (78%)
Frame = +2
Query: 254 QVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 376
+VKIMLPWD GK GPKKP PD + + EPKDE VP +PTSE
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPARQERPEEATTRPHPG 330
GK + E + VA GPAR PE TRPHPG
Sbjct: 96 GKRHQEPARTPVAAGPARITSPEPPATRPHPG 127
>SB_9209| Best HMM Match : Pyocin_S (HMM E-Value=1.8)
Length = 365
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 203 RQHCYQTCASQARSTRNQ--VKIMLPWDQQGKNGPKKPQPDHILVTEPKDE 349
++ YQT SQ+R T N K LP+ ++G P DH T P+ E
Sbjct: 97 KEPIYQTLDSQSRETTNHGNTKNSLPYCDMTEDGYLMPVDDHTYPTPPQSE 147
>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
Length = 804
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA--RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 586 GKQHQEPARTPVAALPAAARVTSPEPPATRPHPG 619
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 30.3 bits (65), Expect = 0.85
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 119 WQAAWSTCQINEVCRWTHDPLWRPLQ*LRQHCYQTCASQARSTRNQVKIM 268
W+ AW+ C + E +T++P W Q L++ Y + A+ +++ +++
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPWLN-QKLKRLIYNRQKALAKGDQDRYRLL 124
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA--RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 774 GKQHQEPARTPVAAVPAAARITSPEPPATRPHPG 807
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 30.3 bits (65), Expect = 0.85
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA--RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 163 GKQHQEPARTPVAALPAAARVTSPEPPATRPHPG 196
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +1
Query: 235 GKEY*ESGQNHVAV--GPARQERPEEATTRPHPG 330
GK E + VA PAR PE TRPHPG
Sbjct: 25 GKPAREPARTPVAALPAPARVTSPEPPATRPHPG 58
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 433 ILSDSGDRLRQRRGREGAHFAGRLEGHGL 347
+LS +GD +R GRE HF + HGL
Sbjct: 769 VLSSNGDFIRSFGGRESMHFRYCVYSHGL 797
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 2.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 113 CIWQAAWSTCQINEVCRWTHDPLWRP 190
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA--RQERPEEATTRPHPG 330
GK+ E + VA PA R PE TRPHPG
Sbjct: 800 GKQRREPARTPVAALPAAARVTSPEPPATRPHPG 833
>SB_47196| Best HMM Match : Extensin_2 (HMM E-Value=0.02)
Length = 376
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 215 YQTCASQARSTRNQVKIMLPWDQQGKNGP-KKPQPDHILVTEPKDEPVPLEPTSEVR 382
Y +++ARSTR Q K +P + K P P+PD LV + P P P + R
Sbjct: 308 YPVDSAKARSTRGQRKSHIPPLDKSKITPWTAPEPD-FLVDRARSTPPP-HPVNSAR 362
>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
Length = 431
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK+ ES + VA PA R PE TRPHPG
Sbjct: 25 GKQRQESARTPVAALPAAARDARITSPEPPATRPHPG 61
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 375 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 280
S+ S G GSSLGS+ R W P W
Sbjct: 215 SIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 280 PARQERPEEATTRPHPG 330
PAR PE TRPHPG
Sbjct: 537 PARITSPEPPATRPHPG 553
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 25 GKQHQEPARTPVAAVPAAARDARITSPEPPATRPHPG 61
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 408 GKQHQEPARTPVAAVPAAARDARITSPEPPATRPHPG 444
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 267 GKQHQEPARTPVAAVPAAARDARITSPEPPATRPHPG 303
>SB_27943| Best HMM Match : Pox_A32 (HMM E-Value=0.047)
Length = 983
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA--RQERPEEATTRPHP 327
GK++ E + VA PA R PE TRPHP
Sbjct: 707 GKQHQEPARTPVAALPAAARVTSPEPPATRPHP 739
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 764 GKQHQEPARTPVAAVPAAAHDARITSPEPPATRPHPG 800
>SB_4563| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1473
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 1010 GKQHQEPARTPVAAVPAAARDTRITSPEPPATRPHPG 1046
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +1
Query: 235 GKEY*ESGQNHVAVGPA-----RQERPEEATTRPHPG 330
GK++ E + VA PA R PE TRPHPG
Sbjct: 369 GKQHQEPARTPVAALPAAARDARITSPEPPATRPHPG 405
>SB_33392| Best HMM Match : zf-CCHC (HMM E-Value=0.043)
Length = 348
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 230 SQARSTRNQVKIMLPWDQQGKNGPKKPQPD 319
S R N+ + LPW+Q P KP PD
Sbjct: 253 SSCRKEDNRYIVGLPWNQDKTLLPDKPSPD 282
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,103,763
Number of Sequences: 59808
Number of extensions: 297708
Number of successful extensions: 881
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -