Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30121
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   3.6  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    27   3.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.8  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   4.8  

>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 87  HHTIFNLDKEKSKLYVGGVPSDAKLQGISFPAFEGQIEELMIGD 218
           H    +LD+E+  LYVG   + A L   SF +  G   ++   D
Sbjct: 615 HSRSDDLDEERRLLYVGATRAQALLYLSSFKSVTGMFADMQNSD 658


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 434 GEGGYFFSLLMQDGRVY 484
           GEGGY  S ++QDG V+
Sbjct: 44  GEGGYGISCVIQDGNVF 60


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 634 NSPSADIPSLDTMNFGGNNKGIL 702
           N PSA + SLDT N+G     +L
Sbjct: 22  NFPSAPVSSLDTNNYGQRRPSLL 44


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 274 EG*IDLLAVWPSRVQVRWPWICHDG 348
           E  +DLL   PS  Q  W WI H G
Sbjct: 280 ESCLDLLLHPPSSAQKNWSWIKHVG 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,407,330
Number of Sequences: 5004
Number of extensions: 77955
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)