Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30121
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.42 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.7  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 610 NEVLKAESNSPSADIPSLDTMNFGGNNKGILQVAGSRL 723
           NE+ + + NSP  D+  L  ++   N   I+++AG  L
Sbjct: 222 NEITRLQENSPLLDLRQLQELHLQRN--AIVEIAGDAL 257


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 546 IVCSGCANYYQILVLPNDTCK 484
           +V S C++Y+Q L+L N  CK
Sbjct: 52  VVLSACSSYFQKLLLSN-PCK 71


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 544 NDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSADI-PSLDTM 672
           NDGKWH + + +      L +   +++  ++S + +   S+DT+
Sbjct: 346 NDGKWHNIYSEK-----GLNILGNIIEGNADSYNTEFYGSIDTL 384


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 544 NDGKWHKLDARRFLAKCSLTVDNEVLKAESNSPSADI-PSLDTM 672
           NDGKWH + + +      L +   +++  ++S + +   S+DT+
Sbjct: 346 NDGKWHNIYSEK-----GLNILGNIIEGNADSYNTEFYGSIDTL 384


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 456 EKKYPPSPT 430
           EKKYPPS T
Sbjct: 339 EKKYPPSET 347


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 456 EKKYPPSPT 430
           EKKYPPS T
Sbjct: 339 EKKYPPSET 347


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 113 RKVQVVRGWSAFRC 154
           R   V+ GWSAF C
Sbjct: 391 RHTSVLIGWSAFLC 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,243
Number of Sequences: 438
Number of extensions: 5504
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)