Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30121
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66370.1 68414.m07538 myb family transcription factor (MYB113... 32 0.34
At1g56650.1 68414.m06515 myb family transcription factor (MYB75)... 31 0.59
At1g66380.1 68414.m07539 myb family transcription factor (MYB114... 30 1.4
At1g66390.1 68414.m07540 myb family transcription factor, putati... 29 2.4
At5g01930.1 68418.m00112 (1-4)-beta-mannan endohydrolase, putati... 29 3.1
At1g79020.1 68414.m09214 transcription factor-related similar to... 29 3.1
At4g25450.1 68417.m03665 ABC transporter family protein similar ... 28 5.5
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 28 5.5
At4g38800.1 68417.m05493 phosphorylase family protein contains w... 28 7.2
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 28 7.2
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]... 28 7.2
At1g20230.1 68414.m02527 pentatricopeptide (PPR) repeat-containi... 28 7.2
At3g20690.1 68416.m02618 F-box protein-related ontains weak hit ... 27 9.6
>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 246
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 475 KGLLAGVIRQHKDLIIVGTTRAYNDGKWHKLDARRFLAKC 594
KGL G +D+++ Y +GKWH++ R L +C
Sbjct: 6 KGLRKGTWTTEEDILLRQCIDKYGEGKWHRVPLRTGLNRC 45
>At1g56650.1 68414.m06515 myb family transcription factor (MYB75)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB75) GI:3941507
Length = 248
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 475 KGLLAGVIRQHKDLIIVGTTRAYNDGKWHKLDARRFLAKC 594
KGL G +D ++ Y +GKWH++ R L +C
Sbjct: 6 KGLRKGAWTTEEDSLLRQCINKYGEGKWHQVPVRAGLNRC 45
>At1g66380.1 68414.m07539 myb family transcription factor (MYB114)
similar to myb-related protein An2 GI:7673090 from
[Petunia x hybrida]
Length = 139
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 475 KGLLAGVIRQHKDLIIVGTTRAYNDGKWHKLDARRFLAKC 594
KGL G +D ++ Y +GKWH++ R L +C
Sbjct: 6 KGLRKGAWTAEEDSLLRQCIGKYGEGKWHQVPLRAGLNRC 45
>At1g66390.1 68414.m07540 myb family transcription factor, putative
/ production of anthocyanin pigment 2 protein (PAP2)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; similar to GB:AAF66727 from [Petunia x hybrida]
(Plant Cell 11 (8), 1433-1444 (1999)); identical to cDNA
production of anthocyanin pigment 2 protein (PAP2)
GI:11935172
Length = 249
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 475 KGLLAGVIRQHKDLIIVGTTRAYNDGKWHKLDARRFLAKC 594
KGL G +D ++ Y +GKWH++ R L +C
Sbjct: 6 KGLRKGAWTAEEDSLLRLCIDKYGEGKWHQVPLRAGLNRC 45
>At5g01930.1 68418.m00112 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872; contains Pfam profile PF00150:
Cellulase (glycosyl hydrolase family 5)
Length = 448
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 454 LITDARWKGLLAGVIRQHKDL-IIVGTTRAYNDGKWHKLDARRFLAKCSLTVDNEVLKA 627
L D +G + V +Q + + VG T A+NDG+W R L K D EV KA
Sbjct: 75 LAADNSTRGKVTEVFQQASAVGMTVGRTWAFNDGQW------RALQKSPSVYDEEVFKA 127
>At1g79020.1 68414.m09214 transcription factor-related similar to
enhancer of polycomb (GI:3757890) [Drosophila
melanogaster]; similar to enhancer of polycomb
(GI:11907923) [Homo sapiens]
Length = 453
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +1
Query: 505 HKDLIIVGTTRAYNDGKWHKLDAR--RFLAKCSLTVDNEVLKAESNSPSADIPS 660
HK L I+ + + + D + R + L S+ VDNEV S P+++IP+
Sbjct: 14 HKKLPILKSFKDFEDDETPTSTTRNSQLLRIASVEVDNEVAPVPSKKPASEIPT 67
>At4g25450.1 68417.m03665 ABC transporter family protein similar to
multidrug resistance protein 2 SP:P21440 from [Mus
musculus]
Length = 714
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 168 ISFPAFEGQIEELMIGDTPVGLWNFVS 248
+S P F G+ E++IG P LW +S
Sbjct: 124 LSMPVFSGRFFEVLIGVRPEPLWRLLS 150
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 364 QITSASHRGISTAIEPVLLRARLRGDQFIPLSGSLQLL-ALTKFHKPT 224
Q+ S+SH+ + T + P+L++ R F+ + + LL + K H PT
Sbjct: 15 QMKSSSHQTLETRMRPILMKGHERPLTFLRYNRNGDLLFSCAKDHTPT 62
>At4g38800.1 68417.m05493 phosphorylase family protein contains weak
similarity to Swiss-Prot:O51931 nucleosidase [Includes:
5'-methylthioadenosine nucleosidase (EC 3.2.2.16);
S-adenosylhomocysteine nucleosidase [Buchnera
aphidicola]
Length = 267
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 106 RLKIV*CPGKSAFLGVDSIRSIVQAL 29
R+ +V CPG+ A LG+DS+ ++ +L
Sbjct: 73 RINVV-CPGRDAALGIDSVGTVPASL 97
>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P49361 Glycine dehydrogenase [decarboxylating] A,
mitochondrial precursor (EC 1.4.4.2) {Flaveria
pringlei}; contains Pfam profile PF02347: Glycine
cleavage system P-protein
Length = 1037
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 659 LGMSALGELDSALSTSLSTVREHLARNRRASNLCHLPSLYARV 531
+G+S AL ++ T +H+ R++ SN+C +L A +
Sbjct: 369 IGISVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALLANM 411
>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
putative / glycine decarboxylase, putative / glycine
cleavage system P-protein, putative strong similarity to
SP|P26969 Glycine dehydrogenase [decarboxylating],
mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
contains Pfam profile PF02347: Glycine cleavage system
P-protein
Length = 1044
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 659 LGMSALGELDSALSTSLSTVREHLARNRRASNLCHLPSLYARV 531
+G+S AL ++ T +H+ R++ SN+C +L A +
Sbjct: 375 IGVSVDSSGKQALRMAMQTREQHIRRDKATSNICTAQALLANM 417
>At1g20230.1 68414.m02527 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 760
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = +1
Query: 19 LNPREPGQW---NGYYPLQGRLTYPDII---LSSTWTKKSPSCTWVE 141
L P PG + + Y +G T D I + S KK+P C+W++
Sbjct: 586 LEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632
>At3g20690.1 68416.m02618 F-box protein-related ontains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain;
contains weak hit to Pfam PF00646: F-box domain
Length = 370
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Frame = +2
Query: 356 GYLTPQSNQVLLFFRTYAPNGL------IYLVGEGGYF 451
GYL +V++FF GL Y+VGE GYF
Sbjct: 307 GYLIYDEEKVVVFFNKEETEGLKSTVHIAYIVGENGYF 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,153,454
Number of Sequences: 28952
Number of extensions: 429160
Number of successful extensions: 1147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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