Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30119
         (363 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0225 - 15855544-15855727,15855796-15856406                       27   4.5  
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742...    27   4.5  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     26   7.9  
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928     26   7.9  

>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +2

Query: 134 PSCCTRCSSC-FWSTPC--SRRMVCAGTR 211
           PS  TRC SC  W+T C  + R  C  TR
Sbjct: 174 PSATTRCRSCTAWATSCPGTSRAGCPPTR 202


>04_03_0289 +
           13972020-13972077,13972444-13973301,13973850-13974235,
           13974249-13974323,13975824-13976139,13976284-13977113
          Length = 840

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 252 RWRRLVXXQLCSTHLVPAQTILLEQGVLQKQ 160
           RW+R +  QL   H    Q +LLEQ +L  Q
Sbjct: 497 RWKRDIQKQLRRKHFQKNQGLLLEQLILSDQ 527


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 146 TRCSSCFWSTPCSRRMVCAGTR*VEHN 226
           T C  C    P   + VC G+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301


>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
          Length = 839

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 201 AQTILLEQGVLQKQELQRVQQEGRYLQPMKPLAPVFHSSLHGQE 70
           AQ I    G+  KQE+  V +E   +  +KPL+P     L  Q+
Sbjct: 219 AQLIKRNTGIPSKQEILDVAKEVGGVYQLKPLSPAVSRKLFYQK 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,116,094
Number of Sequences: 37544
Number of extensions: 102379
Number of successful extensions: 267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)