Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30119
         (363 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    28   1.6  
At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identica...    27   2.8  
At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identica...    27   2.8  
At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identica...    27   2.8  
At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger) fa...    26   6.5  
At5g23690.1 68418.m02777 polynucleotide adenylyltransferase fami...    26   8.6  

>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 306 QSIYAALQS*ADPPHEGVRWRRLVXXQLCSTHLVPAQTIL 187
           +++Y+  Q+  + P + VRW +L    LCS     +Q  L
Sbjct: 467 RAVYSLKQAVTEDPEDAVRWHQLGLHSLCSQQYKLSQKYL 506


>At5g20730.3 68418.m02464 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 198 QTILLEQGVLQKQELQRVQQEGRYLQPMKPLAPVFHSSLHGQE 70
           Q  LLEQ  +Q Q LQR+QQ+ +  Q + P + + H  L  Q+
Sbjct: 741 QQSLLEQPHIQFQLLQRLQQQ-QQQQFLSPQSQLPHHQLQSQQ 782


>At5g20730.2 68418.m02463 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1164

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 198 QTILLEQGVLQKQELQRVQQEGRYLQPMKPLAPVFHSSLHGQE 70
           Q  LLEQ  +Q Q LQR+QQ+ +  Q + P + + H  L  Q+
Sbjct: 740 QQSLLEQPHIQFQLLQRLQQQ-QQQQFLSPQSQLPHHQLQSQQ 781


>At5g20730.1 68418.m02462 auxin-responsive factor (ARF7) identical
           to auxin response factor 7 GI:4104929 from [Arabidopsis
           thaliana]
          Length = 1165

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 198 QTILLEQGVLQKQELQRVQQEGRYLQPMKPLAPVFHSSLHGQE 70
           Q  LLEQ  +Q Q LQR+QQ+ +  Q + P + + H  L  Q+
Sbjct: 741 QQSLLEQPHIQFQLLQRLQQQ-QQQQFLSPQSQLPHHQLQSQQ 782


>At1g63900.1 68414.m07235 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 343

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 140 CCTRCSSCFWSTPCSRRMVCAGTR*VEH 223
           CCT CSS   S P  RR +    +   H
Sbjct: 316 CCTACSSHLTSCPLCRRRIDLAVKTYRH 343


>At5g23690.1 68418.m02777 polynucleotide adenylyltransferase family
           protein low similarity to SP|P13685 Poly(A) polymerase
           (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam
           profile PF01743: polyA polymerase family protein
          Length = 527

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 13  RMNNKPRNRLWYQLNQK*LLLS 78
           +++++PR+R W QLN K L LS
Sbjct: 54  KVSDEPRDREWKQLNSKDLGLS 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,620,870
Number of Sequences: 28952
Number of extensions: 77062
Number of successful extensions: 201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 467982008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)