Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30118
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   5.9  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.9  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 315 QETTAVNFEQP---F*KEQFKPNYGLNAPSW 232
           ++T  VNF  P   F  + +K N  LN PSW
Sbjct: 445 KDTCVVNFSTPITNFFSKIYKDNPSLNPPSW 475


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 538 VKWDDTEFIRRFRVSKNTAFKILEEIANDISH 633
           + WD+T       + K+T F I++++  D  H
Sbjct: 622 IYWDETAKGTPISIEKDTVFDIIKQVETDPDH 653


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 581 LRIQLLKF*KKSLMTYHTPQIGKADSIYRTFFKVPI 688
           L++ L KF K  + T  T  + +   I   FF +PI
Sbjct: 258 LKLPLYKFVKNVIATVVTVPVAELHHIRNAFFNIPI 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,624
Number of Sequences: 5004
Number of extensions: 41222
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)