Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30116
         (469 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         29   2.5  
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                28   4.4  
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_51691| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)                  27   7.7  

>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 295 YICHSKRNN*FLKAFSNYSTRA-HYAA*CSTKLQHNLALCVTES 167
           Y+     N   L   +N STRA HY+A C TK   N  LC  +S
Sbjct: 205 YVNSKAENPVKLPGKANGSTRAKHYSAPCGTKPDFNGVLCRIDS 248


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 276 RLLWQMYEKPFLKKKKKNSRLVLSRADSA 362
           ++ W M  KPFLK  K N    L R+ ++
Sbjct: 26  KIRWSMMSKPFLKSAKNNLTAQLPRSSAS 54


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/54 (24%), Positives = 30/54 (55%)
 Frame = -2

Query: 249 PITAQERIMRHNAQLSFSIIWHCVSLSRIMLCN*PLLNGSFLITDQFFSIVLNE 88
           P+T   R+    A+++F   W+ V +++++  N P L+     +  +FS+ +N+
Sbjct: 321 PLTLTNRV----AEVTFCRSWNAVLVNKVLCSNLPALSTRHAASRNWFSVDVNQ 370


>SB_51691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 92 MKLQLSPTSVFNTRHFNNIFW 30
          MKL LSP +  NTRH +   W
Sbjct: 5  MKLHLSPVNELNTRHLSVGLW 25


>SB_45420| Best HMM Match : TSP_1 (HMM E-Value=0.0024)
          Length = 426

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 274 CACCGKCTRSHFSKKKKK 327
           C CC  C   HF KK+K+
Sbjct: 285 CCCCFICIGHHFEKKEKE 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,191
Number of Sequences: 59808
Number of extensions: 166340
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)