Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30116
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   0.94 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   1.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   1.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   2.9  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 0.94
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 349 RERTSLEXXXXFLRNGFSYICHSKRNN*FLKAFSNYSTRAHY 224
           RER+        L N + Y  ++  NN     ++NY+ + +Y
Sbjct: 306 RERSKEPKIISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYY 347


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 258 FKN*LLRLLWQMYEKPFLK 314
           + N +L +LW  Y+K F+K
Sbjct: 96  WNNQILHILWTSYKKVFMK 114


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 258 FKN*LLRLLWQMYEKPFLK 314
           + N +L +LW  Y+K F+K
Sbjct: 79  WNNQILHILWTSYKKVFMK 97


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 249 PITAQERIMRHNAQLSFSIIWHCVS 175
           P T   ++ R  A +  +I+W C S
Sbjct: 151 PFTYPSKMSRRRAAVLIAIVWICSS 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,697
Number of Sequences: 438
Number of extensions: 1755
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)