Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30116
         (469 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22750.1 68417.m03283 zinc finger (DHHC type) family protein ...    28   3.6  
At5g02070.1 68418.m00128 protein kinase-related contains eukaryo...    27   4.8  
At4g10620.1 68417.m01736 expressed protein                             27   6.3  
At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein ...    27   6.3  

>At4g22750.1 68417.m03283 zinc finger (DHHC type) family protein
           contains DHHC zinc finger domain PF01529
          Length = 302

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +1

Query: 223 HNALLC--CNWKTPLRTNYCACCGKC 294
           H    C  CN   P R+++C+ CG+C
Sbjct: 113 HGVRYCRKCNQYKPPRSHHCSVCGRC 138


>At5g02070.1 68418.m00128 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 657

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 277 ACCGKCTRSHFSKKKKKT 330
           A CGKC      KKKKKT
Sbjct: 275 AICGKCRHGKHCKKKKKT 292


>At4g10620.1 68417.m01736 expressed protein
          Length = 597

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 119 LTNFSQSC*MKLQLSPTSVFNTRHFNNI 36
           L++F  S   K   SP S  N  HFNNI
Sbjct: 22  LSSFKSSIPTKPNPSPPSYLNPHHFNNI 49


>At3g60800.1 68416.m06801 zinc finger (DHHC type) family protein
           contains DHHC zinc finger domain PF01529
          Length = 307

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 241 CNWKTPLRTNYCACCGKC 294
           CN   P R ++C+ CG+C
Sbjct: 132 CNQLKPSRCHHCSVCGRC 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,039,775
Number of Sequences: 28952
Number of extensions: 117549
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)